Array 1 161418-160723 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MPIT01000003.1 Campylobacter coli strain VA15 Contig_4, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    161417	    36	  83.3	    30	AACCG.T.............................	AAAATGCTCTTATTGTTTATACCTTTCATA 	
    161351	    36	 100.0	    30	....................................	AACAGCACTTGCCAAAGCTTGAGAATTGAT 	
    161285	    36	 100.0	    29	....................................	ATAACTGGGCTGAAGAAATGTATCTTGCA  	
    161220	    36	 100.0	    31	....................................	CCATTCCACACTTGCATTCGGCTTTCCGCCA	
    161153	    36	 100.0	    29	....................................	TGTGTTAATGCGTGATAATATGCCTTATC  	
    161088	    36	 100.0	    30	....................................	AATTGTGTTTGCCAATTTTGAGAGTAGGCA 	
    161022	    36	 100.0	    30	....................................	ACAAGCAAGCAGTTTAACTATTTAAGCGAG 	
    160956	    36	 100.0	    30	....................................	TCATATGCTTTTTGTCCTGCCCAACCTATT 	
    160890	    36	 100.0	    30	....................................	AAGAGCAAAATTACAACATAGAAAGCTTAA 	
    160824	    36	 100.0	    30	....................................	TCCGCTCCAGTTTGATGATATTGAAGCATT 	
    160758	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        11	    36	  98.5	    30	GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT	                               	       

# Left flank :   TTATATCCTGCTCATCTTTCACTTGCTAAGTCTTAATCATAAGCTTAAAAATGATTATTTTGCTAGAGTTGCCATAAACTGCGTGGCATTATTTATTTTTATTTATGCGGGGGTTAATATTTCGATGACTATAGGTTTTGCACCGGTTGTCGGTATACCACTGCCTTTTTTTAGTTATGGTGGAAGTTCTTTTACAATTTTTATGATTTTCTTTGGAATTTTACAACATTTAATCACTTTTAGATATTTTTGGACAGATAATAAAAATAAATAAAATAACTTTAAGCAAAGATAAGATATAATTCTATCTTCACAAATCAAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCACTACTTTAGTTGTACATATCTAATCCCAAAAAATGAATTAAATTAACTTTAACTACAAATAATCTATACCGTTTACTATCACCTTAAATTGAAATAGA
# Right flank :  AGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTGTTTGATTGGATATCAATATACTTTTAAAAGCTTCATCATAGGCCATGTTTTTTGCTCGTCTTTAAGGCGATATCTTCCCTTAGTTTAAAATCAGCCTTGATTTTTTCTCCAAGCGGGGTTATAATGTATTTTTCAAAAATTTTCAATCCCTGAATTCCTAATTTTTTAGCCTTTACATTTCCTTCTTCTGCATTTGTAAACAATAGCTTTTGATTGTCTGTTAAGTTTTCAAATTTATTATCATGTTTTTCAACACAAATACTTGAGTTACTGATATCAAAACTATTATAATAAGCAAATTCGGGT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:80.56%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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