Array 1 85-418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKC01000009.1 Escherichia coli strain JEONG-9602 NODE_189_length_590_cov_6.15119_ID_377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85 29 100.0 32 ............................. GTCACAACCGAAAAAAAACGTGTAACGCGCGC 146 29 100.0 32 ............................. TAATTTGAGCCTCATTTAAATGGGGTCTTTCA 207 29 100.0 32 ............................. AATATCACGAAATGATGCCGATGATCATCCTT 268 29 100.0 32 ............................. AGTAATAAAATTCAGGAGTTCCAGTTCTCTGT 329 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 390 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76693-75687 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDKC01000091.1 Escherichia coli strain JEONG-9602 NODE_16_length_76736_cov_8.52572_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76692 29 100.0 33 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATAT 76630 29 100.0 32 ............................. GATGTGGCGCATAAATCGGCGCTGGCTGGCTG 76569 29 100.0 32 ............................. CTCTAATATATTCACGCGACAAATATACACAA 76508 29 100.0 32 ............................. ACGGGCAGGGACTGACGTTGGAGCAGGCGATC 76447 29 100.0 32 ............................. TTCGGTCGCGATTTGGGCTTGTGTTTGGGTGT 76386 29 100.0 32 ............................. GCCCAATCGGACGATGACAGCGAATATACAAC 76325 29 100.0 32 ............................. CAGGCTGAAGCCGCTAACGAGGTTACGGGTTG 76264 29 100.0 32 ............................. GCCTCATCGATACCGGCGCGTGCCCGTTCAAT 76203 29 100.0 32 ............................. GTATTTATAGATATGACAACGCAGGACTTCGC 76142 29 100.0 32 ............................. CCGGACGGTGGATATTATGACGGAGCAGGATC 76081 29 100.0 32 ............................. ACGGCAAATCAGCCGCAAAAATGAAACAGGCC 76020 29 96.6 32 ............................C AACTTCACGTCGTCCGCCGTCGGCGTGATACT 75959 29 96.6 32 .......................T..... TCTGCAAGTTCATTCAGGGCTATCGCCAGCTC 75898 29 100.0 32 ............................. GCTGCAGTAATCGGGAAGATGGGCGGTTTGTG 75837 29 100.0 32 ............................. AATGATTTAATACCAGACGCAGAGTGCCACAC 75776 29 100.0 32 ............................. GCGGTCCACGGCACACAGGATCCGTGTATAAA 75715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGGATAAACCGTCTCCGCGATAAGTCTCGTGAATTAATGCGG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //