Array 1 19241-19654 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================== ================== 19241 32 100.0 35 ................................ TGGCCCTTGTAGTCCATCCACTGCAATTTTATAAC 19308 32 100.0 33 ................................ CGGTTAAAGCGTCCAAATTTGCGCGCAAGGCTA 19373 32 100.0 36 ................................ AGCAGACCCTTGAGCATGCTTAATGATTTCTTCGTC 19441 32 100.0 33 ................................ TTTACTTATCTTTTTGACTAATGTATCCAAATA 19506 32 81.2 85 ..........AT.C........C.......TC TCTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGAGTTTGGCCCCCACTCTTTTTTACGCAAAAAC 19623 31 75.0 0 ...........TT........AC..-...TCA | A [19633] ========== ====== ====== ====== ================================ ===================================================================================== ================== 6 32 92.7 45 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCGCTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 7.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:0, 6:0.25, 7:-0.92, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33337-33968 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33337 32 100.0 34 ................................ ATTTTGAAATTGGAAATCCAATAAGTTCATTCTT 33403 32 100.0 34 ................................ CCCTAACACGGTTTATCTTGTATCGTTAGTAGTG 33469 32 100.0 35 ................................ TGCCCAAAATAGAAATTAATTAGTAAAAAATCAAG 33536 32 100.0 36 ................................ AAGATTCTCTTCACTAAAATGTTCTGTCTGGTCAAA 33604 32 100.0 33 ................................ ATATAGCTCCTTTTTCATTCCGCGCCCTCTTTC 33669 32 100.0 34 ................................ GATTTTATCAAGAGCTGAGAAAAATTCAGATGCA 33735 32 96.9 35 ..........A..................... CCATTGATAGTTTTGGCCGAAATTCTCAAATTCTC 33802 32 100.0 36 ................................ TTCGTGAAACCTCACGTCAGCATTCACTACAAAACC 33870 32 96.9 35 ..........A..................... AATAAATGGTCTGTAGATGATCTGTACACATCTAT 33937 32 78.1 0 .G.........C..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.2 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGCCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCTGATGCTCACTTTTCTCGAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTAAAATATGGGTTACTATGTACAAAAATGTAATAATGTGATCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTAGCAAGAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCCTTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 87020-87249 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 87020 31 100.0 36 ............................... TTTAATTCAAATTCGCCGTTGCTTATGCAGTAGTCT 87087 31 100.0 34 ............................... TACAAAAGTCAGGCCGAGAAGCTAATGGCGGACA 87152 31 100.0 36 ............................... TCCCTATATAAACCCAGATACTGGCATGCTATGGTA 87219 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 100.0 36 ATCGCACTCTTGTGAGTGCGTGGATTGAAAT # Left flank : CGGGTTAATGGGCATTCCAATTATCGCGATTCAAATACTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGGTATAAGTAGCCGGCAGGCTTTGTATTTTTGGGGAAAGCACGTAATTATGAGTGGCGGTGAGGCCAGTGTTTGTGGAATGGGCGATTGCTTGCAAAAAGACATTAGATTTTGATCTATGATCATTAAAAGTGGAGGACGTGATATAATTTGGATAGTCTGACACGCTGAGAGGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTCAAATATGAGAAAATATGTGTAAAAGTGGTGAAATGTTGTTAGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGATAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCCTTGCAGGGAACCGTGCTATTGTTTGACTGAAGGTGTACCAGCACCTTCAGTCTTTTTACTTTAC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 98949-99514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 98949 32 100.0 35 ................................ GTCCGCATCCGACTCTGATACAAAGGTGTAAGTCG 99016 32 100.0 33 ................................ GCTTCAATGATTTCTTCTGCGGTTTTGAAAACA 99081 32 100.0 36 ................................ ACCGCTTGATTTGTCACTTTTTAGTCCTCCCTTATT 99149 32 100.0 34 ................................ CTCGATTTTCTTTTGCAATTTTGCGGCCAACATA 99215 32 100.0 36 ................................ CAAAGTAGAAGATGTTGTCTCGCTTATCAAACAACA 99283 32 100.0 33 ................................ TTGTCTGCCACATTGTCCAACTCAACCAACTTG 99348 32 100.0 36 ................................ TCAATAGGATCCGAGCTTTTCAAGTCATATGATTCT 99416 32 100.0 35 ................................ TTCGAAATACCAGTCGTTTTGGGAGTGGTATTGAA 99483 32 87.5 0 ...............GT..........A...A | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 98.6 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TGATTAAAAAAGCGAAAAACATTCGTACTGTTGAGGAAAGTTGGAGATTTGTAGATTTTAAAAGATATTCCATCACCTACGACAAAAAGTTAGCACTTCCAGCCATCGAGGGTTGGGCAAGGTATGAGGGGGATTTAACCCCATTCACTGAATTACTAGAAATAGGGAAATCACTACATGTTGGCAAAAATGCTACACATGGATTCGGACATTATGAAGTTTTTGCTGATAACTAAATTTTCGAATCTAGAGTATGAGACAAAACCGTCCTTTTTGACAAGCAAGGTGTTGATTCCATAAAAATACTGCCTGCAAACTGTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAACAGAGCTCAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTGGTTTCCCATGATAAGATAAAGGAAAGCAGTGGATTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCT # Right flank : ATATATTTAGATTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGACGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 111177-111941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 111177 32 100.0 34 ................................ CAGTCAAAGGGCACTTGCTCCTTTGCACGCTTTA 111243 32 100.0 35 ................................ TAAGTCTGGATTTTCTTTAGTCAACTTCAATAATT 111310 32 100.0 34 ................................ TGAAATGACACTTAATCGAGATTGAATATCTGCT 111376 32 100.0 34 ................................ CTGGATAATGATTATCAACTACCAGATAACCCTA 111442 32 100.0 35 ................................ AATAGGCGGCGGCTCATTATCGAATTATCTGGATA 111509 32 100.0 35 ................................ CCCTCTTTATTTTTGAATCCCTTTAACTTAGTCGT 111576 32 100.0 35 ................................ TAATACAAGATTTTCTGTCCCCATTAATTTCAATT 111643 32 93.8 34 ..........TA.................... ATCAAAATCCGCATTTTTATCTTCCGCTTTTTCA 111709 32 100.0 36 ................................ TTTGCTCTTTGGTAATGAACCCCCATACCTTGCAAA 111777 32 90.6 34 .......A..TA.................... TTTGAACTGGTCAGGTGTCCAGAAGTTCATTTGC 111843 32 93.8 34 ............A........C.......... TTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTC 111909 32 68.8 0 .G......T.T.A.A.C....CCA...T.... | C [111939] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 95.6 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTGCTGTTCGTGGTATTAAAATGTGGTGGGATTAAAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGTTAATGTGTATAAGAATGTGTAAATGTGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TCCACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATTGCTTGCCATAACTTTTGATAGGAACCTTCTTCGAATGCTTCTACTACTAGTTTTTCGACGCCAACTTGTTGCTCCATTAGGCTTTTTTGGAATCTAGGGATTTCTCCGACAACCAGTTTTTCGGGGCCGTTGCTGCCGACGATGCAAGGGATTTCTACCATTGCTGTTGGGTCGAAGTTCTTGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGTTAAAGGCAATCGCTTTTGCTAAATCAACGATGTAGGAAGCGTGCTCATCAAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 118787-119483 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 118787 32 100.0 36 ................................ ATCTTTTGTATTTCTTCATACCGTTCCTCGCCCAAC 118855 32 100.0 34 ................................ TTGTAGATGGATCTATACCGACGTAGCGCATGAT 118921 32 100.0 33 ................................ AATGTTAAAGAACGAAAAGCCACAGCAACTAAT 118986 32 100.0 36 ................................ TTTAAAACATTCGTTGTGAAGGAATGTCTTTGCATG 119054 32 100.0 34 ................................ TTATCACCACAATTGTACCTTGGTAGATATAATC 119120 32 100.0 35 ................................ TCTGCATAATGAAAAGCTAATTGAGTTTGCAAATG 119187 32 100.0 34 ................................ TCGGCGCTATAAGGTGTCGTAATGTTCATCACAA 119253 32 96.9 36 ...........C.................... CATGTGGATTCTTTTTGTCAGCGATATGGGCAATGA 119321 32 96.9 33 ...........C.................... CACATTCACATTCTGAATATCTAACTGGTTGAC 119386 32 96.9 35 ...........C.................... CGTTTGGTTGGTTCTTCATCTTTTCGATGATTTTT 119453 31 84.4 0 ...T.......C........-A.........G | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTATTTCGTGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAACCTAAATATGAAATAATATGTGTAATAATGTTTAAATATCGTTTGTGTCCTATGATATGATAGAAGAAAAGGGCGTTTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : GGCAACGTCCACCGATTGCAATATAAGGCGCTTGGTCGCACTCTTACTTCTACCATTTCCACGAGGCCACACGACCAATTCCTCTTGAGATATGAAGAAAGTGTCCACTTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCGACCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTCGTTTTTCGCCACTCGCGCATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTGGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAAATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAAACATTC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 131447-132271 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 131447 32 100.0 35 ................................ CTCGACAAACAGGTTGGAGTGGTGGATTGTTTTTC 131514 32 100.0 35 ................................ TCTATTACTTCAATGTTTTTTAATATGTCATCACC 131581 32 100.0 35 ................................ TATTTCTCCCTCCGAGTCTACGTATGGTCTGACTG 131648 32 100.0 34 ................................ GAAGAAGAACTAAAAGAAATGTACAAAAATAACA 131714 32 100.0 33 ................................ TATATAGGAGGAATGAAAATGGCTAGCTTCAGA 131779 32 100.0 35 ................................ CCAGATTTTTTATCAAAAGATACGCCCCTAACTCC 131846 32 100.0 35 ................................ TGATTTTGCACTTATCATTATGCAAACAGAACTAG 131913 32 100.0 37 ................................ CTTTCGGTTATGTATTTAGCCTTGTCATGTATGCAAT 131982 32 100.0 34 ................................ ATATCGGCATTGTATATTGCCGCATCTGCTGTCT 132048 32 100.0 26 ................................ TCACTATGCTCAGACTCATTTTACAA Deletion [132106] 132106 32 100.0 35 ................................ CAATACGTCATGACTTCCCCTAACACTGGATGGGT 132173 32 96.9 33 ............A................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC TT,G [132182,132197] 132241 31 78.1 0 ...A.....C.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 98.1 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGAAGCATGGAGTCTCGTTCACTTAGGAAAGGTGAGTTCATGGCTTTTATTAGTGATCGTTAGTTTTCTGATCGTCGCGACGTTAAAACAGGTGAAGGGGAAAAGGCGCACTGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTTGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGTGAAATGTTGCTCGTTGTCCATGATATGATAAGTGAAAGAGCGGTTTTTTCCTATTATTGATTGTTTCACTGCTAATAATTAGGAGAATTTCGCT # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCAAACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCCGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTGCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAACCATTTATACAATCAATTTTTTC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 136190-136681 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 136190 32 100.0 34 ................................ ATAAATTTGCATTTGCTCATGTAAGAGTTCCTGA 136256 32 100.0 33 ................................ AACGCCTTTGTAACTTACTTTTAAATCCACCTC 136321 32 100.0 34 ................................ GCTTATATATGGGTGTATAAGGCGTCACAAGGAC 136387 32 100.0 34 ................................ CATCAATTTGATTGTGTTCCGCATCCAGTCTTGT 136453 32 100.0 34 ................................ GCAAACACATCTAAAAAACTAGACCGCATACTTG 136519 32 100.0 34 ................................ TGATATTCTTACGGTCTCGCTTTATCATCATGTC 136585 32 100.0 33 ................................ CGAACTAGAAGCGTTACTCGACGCGGCTACGAA 136650 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 8 32 100.0 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTAAAGGAGAATGAATAGTCTATAATAACTTGTTTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTCGAAAGCAATTCATACCTCCTTTAGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAAATATGTGTAAAAATGGTGAAATGTTGTCTGTATGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTAGGGGGATTTCGCT # Right flank : TTCGAATGTTGCCGTCTTGTTGTAACGCATGTTCGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGGGAACTCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGACGACAACATGAAGAAAGCCGTTCCGGGGGAGGGAATGGACGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 197146-197377 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCD01000026.1 Alkalihalobacillus clausii strain 7540-1 contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 197146 32 100.0 35 ................................ GCTAAGGCCGTGCAAGTTCTGGTCTTTACGGATGT 197213 32 100.0 33 ................................ TTTATGAGGTAGTTGCGGATAGTATTTTAAAAC 197278 32 96.9 35 ......T......................... TATTAAGTCTGCAATAGGATGGTCTTTTTCCCTAC 197345 32 93.8 0 ..............................TC | A [197371] ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCACACATGAAATCCCAGGGAGGTTCGCACCAAAATCCACTTTTAATATGTAATAATGTGTGTAAAAATGGATTAATGTGAGCGGAGCCGCATGTTAAAATAGGAGAGAAAAACGAAATTCGCGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTATTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATAACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCTGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGAGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //