Array 1 336404-337029 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOKN01000007.1 Delftia tsuruhatensis strain LMG 29104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 336404 32 100.0 35 ................................ CCTGAGTAGGAGTACGCCCAACTCCACCAGTCCCG 336471 32 100.0 33 ................................ ACATCGGCGATGGCTGTCGTGAAAGGGTCGGTC 336536 32 100.0 33 ................................ ACTGCCTGCGACCGAGCTGGATAGCTCCTGTGA 336601 32 100.0 34 ................................ TACAGCGAAGCCGAGCGCGCGGAGATCCTGCAGC 336667 32 100.0 35 ................................ CACTTGAAGACCAGCACGCCCTCGGGCTCCAGCAC 336734 32 100.0 33 ................................ TGAGGCCGCGATGAAAGCCACCGACACCCCTCC 336799 32 100.0 34 ................................ AGCGAGTTGCTTTCGAGCGAATCGCCTGCTTGTG 336865 32 100.0 35 ................................ TCGAGCTCAAGCGCATCCAGACCTTGATGGACAAG 336932 32 100.0 34 ................................ CTTGGCCTGGGCTGCGTCGTGGGCCTTGCGGGCT 336998 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGAAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTAAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCAGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGGGCGAGCGAATGGCTGAACGCCGATCCCGCAGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : GATACAACTGACTAGGTCAGCGCCGAAGGTGCGGTCGCGTGGGCTGCTGCCGGTCTCGTTGACACCGACCTAAGCTTCTTGAGCTTGCTCGAACTGTACGGGACTGAGATATCCGAGCGTCGAATGCCGACGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75687-73604 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOKN01000016.1 Delftia tsuruhatensis strain LMG 29104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75686 32 100.0 33 ................................ TTTTTCGAGCTCACGCAGACGCACAGCGAGCTC 75621 32 100.0 35 ................................ TGGCGGTAGGCCCGGCTGTTGTTCACTGCCTGCGA 75554 32 100.0 34 ................................ GGTGCTGGAGCGCCGCAAGGAGATCGCGCCGAGG 75488 32 100.0 34 ................................ ACTCTGCGGGGCAAATCGTTTCGATGGCCTTTTT 75422 32 100.0 34 ................................ ATGAGACCCCAGATGACGACGCCGGCCGCCATGA 75356 32 100.0 34 ................................ TGCTGCACTCTGTATATCAATCCCGACCACAAGA 75290 32 100.0 35 ................................ CTTGAAACGGAACTCGCTCATTGCGACGCCCTATC 75223 32 100.0 34 ................................ GGCTCTGGACAGATCGCGAGTCCGAGCCCCAGCC 75157 32 100.0 33 ................................ CTCAAGGACGAACTGACCGAGGTGCTGGAGCTG 75092 32 100.0 34 ................................ ACCCCATCGGACTTACGCCTGCTGGGGCGCTGGG 75026 32 100.0 34 ................................ AGGGCGTCAGTAGACAGCGACCCGAGAGCGGTCT 74960 32 100.0 35 ................................ CAATTGATAGCAACGGAACACGACAGCCTCACCGT 74893 32 100.0 35 ................................ TCCCCGAGATTGAATGCAGCCCGGTCGTGTCCAGG 74826 32 100.0 35 ................................ GTCCATGTCGCTGCTCGCTGCGTCCTCTTGATTGG 74759 32 100.0 36 ................................ TGCCAGGGACAAACACCATTGCGCCCCCTGGCACTG 74691 32 100.0 33 ................................ GGCGGCGTGCTGGACAAGGCCCGAGGCGGTGCC 74626 32 100.0 35 ................................ GGCGCCAAGGCTGTTGCAGCAACTGGCATGGCCAT 74559 32 100.0 34 ................................ AAGGCTATTTGGGACATGGCTACGGACCTTGTGT 74493 32 100.0 34 ................................ GCAGAGCTGATCAAAGACCTGACCACCGAAGACC 74427 32 100.0 33 ................................ TCTTTGAGCGTGTCCAGCTGGCTGAGCAGGGGC 74362 32 100.0 34 ................................ CACGGCGCCGAGCCGCCAGCGGACTGGCGCGAAG 74296 32 100.0 34 ................................ TAGGGCGACGATTTGCGGCCCGCTGTGCGGCAGT 74230 32 100.0 35 ................................ TTACGGGCGTAGTCGTCCCGGTAATAGTCTCGATC 74163 32 100.0 34 ................................ CTGCCTGCGACCGAGCTTGCTGGCCCCTTCGACG 74097 32 96.9 34 .......T........................ GTCGATGACGTACAGCGGACCTTGATCCTTGTCG 74031 32 100.0 34 ................................ GTGCAGGCCGGCAGCGACTGGCGCAGCCTCAACC 73965 32 100.0 33 ................................ TATGCCGTGGGCCTTCGCATTGGGATTGCAGAG 73900 32 100.0 35 ................................ CCGAACGCTGGATACTGGCGGAGACTGTCCCTTTC 73833 32 100.0 34 ................................ CGGTCAAACATGTGCACGTAGACGGTCTGGAAGT 73767 32 100.0 34 ................................ CAGTCCCTGTTGGTCAAGGCGAACCGGAGCATGC 73701 32 100.0 34 ................................ ATCACGCAGGACCCGACGCTGGTGCACCAGACTC 73635 32 96.9 0 ..............................G. | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.8 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GGCGTGAACTACGTGACCGGCGACTACTCGCGCGGCGTCAGCGGCTTCTGGGTGGAAAACGGCGAAATCGCCTTCCCCGTGCATGAGATCACCATCGCCGGCAACCTCAAGGACATGCTCAAGGGCATCGAGGCCGTGGGCGCGGATGCCTACAACTACGGCGCCAAGACCGTGGGCTCTATCCTGATCAACCGCATGAAGGTGGCTGGTAGCTGATTGGCTTGCGGCTGCGCATGCTGATGAAAAGCGGCCCGAAAGGCCGCTTTTTTGTGGGCACCCAGTCACCGCGTGCCCCGGCCGCAGTTGGCCGCACCAGCTCGCGTCCCGCGAACCCCAAGTGACCTTTGTCCTCCCCTGAGGTTCGCATTTCTGCAAGCCGTTGTTTTTGTTGAGGCATCACTGCGTCTTTCGTGGTCCTTGCCGTTTTTCCGTGACAGAGCGCGCAGGTTCGCGATGGCGAAGCTTTTTATGCAGTGGTACGGCTGGGTTATAAGCATGCC # Right flank : ATGGCCATCAAGCGCGAAATGACGGGTTCTGGCAATCGCTGACAACCCGATGCCTGCATGTCGGCAAGGCGCTGTCCTACCGGATGAGCAGGGTTTGGGAAGGCGATGCGACTGATTCAAATTGTCAAATTTGTTCCCGGATGTGTTTCTTCCGTGCCAGCAGTCTGGCCGGTTTGCGTAGGTGGTTCGAGGGAGAGCGACGTGGGTTTTCTGAGGCGTATGAAGTTGGGAACCATGCTGGGCATGGGTTTCCTTGCGGTGATCGTGGTCTGCGTGTGCGTGGCCGGCTTCGGCTGGATGAAGCTGCACGATCAGGGGGAGCAGTTGCGTGTTTTGGCTGAGGACCGCATGGGCAATCTGGCCCGGCTGCAATCGCTCAAGGACAACGCCAATGTGTCGGCGCGGGTGGTGCGCAATCTGGCGCTGATCACCGATCCGGCGCAGATGGCCGAGGAGAGCCGCCGGCTGGATGAGGTGGTCGCCAGGAACGGCCTGGTCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 99233-97204 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOKN01000016.1 Delftia tsuruhatensis strain LMG 29104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 99232 32 90.6 36 CCA............................. ATTGCAGGAGCTGGCGGCGGTGGGTCTAGCTGGGAG 99164 32 100.0 34 ................................ ATCATTCGGGGGTGCGGGCGTCACCTGAACAACA 99098 32 100.0 35 ................................ CGTTTGCTCCCACCAATTAATTACAACCGGCAACA 99031 32 100.0 36 ................................ ATGAGGTAGGCCACAGGCGCATAGGCCTCGACACGG 98963 32 100.0 35 ................................ ATGCGCTACCTGCAGAGCCAGCAGGCGAGCCGTCT 98896 32 100.0 36 ................................ CGTCCCACCAGAACCAACTGCCGAGACCTGTGTGCA 98828 32 100.0 34 ................................ CTTGCTGCCGAAGTAGAAGGACCTGCCTCGGCCA 98762 32 100.0 34 ................................ GTCGTATGCAGGAGCAGTCCAGGGACGATCCGAG 98696 32 100.0 35 ................................ CAACAAGCGTCAAGGCGGGCGAAGCGTCAGCGGAC 98629 32 100.0 34 ................................ ATGATGTGCCTGCAGATGGCCATCCCGCCCATTG 98563 32 100.0 35 ................................ CCATGTGCGGCTGTCTTTGACGCCGCTGCGCTTTT 98496 32 100.0 33 ................................ GTACTGCCCGCGCTCCTGCGGGCTCTGCTCGCT 98431 32 100.0 35 ................................ GCCGCCTCGGCCGCCGTGTCCGCTGACTTCTGCGC 98364 32 100.0 33 ................................ TTCGCCGACAACCCCGGCGCGGCACTGCTGGCG 98299 32 100.0 36 ................................ CCGTTGATCCAGTTCGGGGGCTTGCCCCGGCCGGTC 98231 32 100.0 36 ................................ TGGGCGATCAGCGCGTCCTTGAACGCCGTGTACAGC 98163 32 100.0 33 ................................ GAGTTCTCCAGCAAGGAGACCCAAAAGGGCCTC 98098 32 100.0 33 ................................ AGGCATATCGGCCACCCCATCACGCTTGTCGCT 98033 32 100.0 34 ................................ ATCGACCACCTCCGCCAATGGTCAGCGCCTTCCA 97967 32 100.0 35 ................................ TGGAACGAGCCAGCGCCGCCGCCAGGGGTGAACAG 97900 32 100.0 36 ................................ GTTCCCGGTCTTGTTGTGCTCGCGTGGGTTACTTGT 97832 32 100.0 35 ................................ ATGCTAATGTGCGCGCGCTAATCGGCCGTCATGTG 97765 32 100.0 35 ................................ CAGTCCATGACTAGTAACGTGGGTCAGGCTCGCGA 97698 32 100.0 34 ................................ ACGCCCGCCGTGGCGCCCTGCACCATACCAGGAG 97632 32 96.9 33 .........T...................... TCCAGCGCATCGTCGCGCTCGTATCGCACCCGG 97567 32 96.9 35 ..........T..................... TCCTGATACGGTGAAGACGGTGCGGGGTCTGCGGT 97500 32 100.0 34 ................................ ATCCACTCGTTGTAGTCGTAGAACTTCTCGCCCT 97434 32 100.0 33 ................................ ACCGCTCAGGTGGCTGCCTTGCAGCAGAGGCCG 97369 32 100.0 35 ................................ TTCGCCCGGATGCCCGAGATCAACGCGAAAGCTGC 97302 32 100.0 35 ................................ AAGGCCAAGGTGCGCCATTACGATCACGGTGCACC 97235 32 90.6 0 ..........T....AC............... | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.2 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : GAACTCGCGACTGAATGTCCTTCTTCTCTCCATTAACCACCTCCGGTTTCATCTGCCACCTTAACAAGGTGTCATCGAAACCGGCAGCAG # Right flank : CCCTGCCGCCACAGCAAGCGCCCCACGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGACCGCCATTGAGAGAGAGTCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCTGCATGCCCATCGATCCGCCGGATATAGGGAGATGTGAGCACAGCCATGGCATTGCCATCAGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCCTGTAGCCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAACTGCGTCTCGGGCAGTGGCACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGCGCGGCGTTCGGGTGTCTGGCAGGCCAGCAGTACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATTGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //