Array 1 317514-319127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLQ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain TURKEYa isolate H178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317514 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317575 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317636 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317697 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317758 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317819 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317880 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317941 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 318002 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 318063 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 318124 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 318185 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 318246 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318307 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318368 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318429 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318490 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318551 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318612 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318673 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318734 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318795 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318856 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318917 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318978 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 319039 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 319100 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335260-335899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLQ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain TURKEYa isolate H178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335260 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 335321 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335382 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335443 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335504 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335565 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335626 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335687 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335748 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335809 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335870 29 96.6 0 A............................ | A [335896] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //