Array 1 3006087-3004423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012921.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3006086 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3006025 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3005964 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3005903 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3005836 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3005775 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3005714 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3005653 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3005592 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3005531 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3005470 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3005409 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3005348 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3005287 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3005226 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3005165 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3005104 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3005043 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3004982 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3004879 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3004818 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3004757 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3004696 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3004635 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3004574 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3004513 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3004452 29 96.6 0 A............................ | A [3004425] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3023471-3022345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012921.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SA02DT10168701 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3023470 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3023409 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3023348 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3023287 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3023226 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3023165 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3023104 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3023043 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3022982 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3022921 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3022860 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3022799 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3022738 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3022677 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3022616 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3022555 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3022494 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3022433 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3022372 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //