Array 1 19901-21881 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWQB01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCIMB 1024 NODE_22_length_61872_cov_9.05693_ID_20485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19901 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 19962 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 20023 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 20084 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 20145 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 20206 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 20267 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 20328 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 20389 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 20450 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 20511 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 20572 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 20633 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 20694 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 20755 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 20816 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 20877 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 20938 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 20999 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 21060 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 21121 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 21182 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 21243 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 21304 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 21366 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 21427 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 21488 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 21549 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 21610 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 21671 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 21732 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 21793 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 21854 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38014-39551 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWQB01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCIMB 1024 NODE_22_length_61872_cov_9.05693_ID_20485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38014 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 38075 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 38136 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 38197 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 38258 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 38320 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 38381 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 38442 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 38503 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 38564 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 38625 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 38686 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 38747 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 38808 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 38869 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 38930 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 38991 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 39053 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 39114 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [39156] 39156 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 39217 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 39278 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 39339 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 39400 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 39461 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 39522 29 96.6 0 A............................ | A [39548] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //