Array 1 172275-171146 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MYVU01000004.1 Salmonella enterica strain BCW_6280 NODE_4_length_394071_cov_0.268892, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    172274	    29	 100.0	    32	.............................	GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 	
    172213	    29	 100.0	    32	.............................	GATGCTAACCACTATTTCATCCGCCTCGACGA 	
    172152	    29	 100.0	    32	.............................	GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 	
    172091	    29	 100.0	    32	.............................	CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 	
    172030	    29	 100.0	    32	.............................	CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 	
    171969	    29	 100.0	    32	.............................	ATTGATCCAATTAACGTAGCTGCAATGTTTGT 	
    171908	    29	 100.0	    32	.............................	GCCGCGCATGACATCGAAAAAATGTGGGAAAA 	
    171847	    29	 100.0	    32	.............................	GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 	
    171786	    29	 100.0	    32	.............................	TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 	
    171725	    29	 100.0	    32	.............................	TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 	
    171664	    29	 100.0	    32	.............................	CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 	
    171603	    29	 100.0	    33	.............................	GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC	
    171541	    29	 100.0	    32	.............................	ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 	
    171480	    29	 100.0	    32	.............................	TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 	
    171419	    29	 100.0	    32	.............................	TTACTGAAACGGATAAAAAATAATCAGGGGGG 	
    171358	    29	  96.6	    32	.G...........................	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 	
    171297	    29	 100.0	    32	.............................	CGCAACTATCCATGCAAATATTTCCATTGCTA 	
    171236	    29	 100.0	    32	.............................	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 	
    171175	    29	  96.6	     0	............T................	|                                	A [171148]
==========	======	======	======	=============================	=================================	==================
        19	    29	  99.6	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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