Array 1 25785-26892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCH01000043.1 Vibrio navarrensis strain 2232 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25785 28 100.0 32 ............................ TTTAGCCACTTCCCTTTCGACTCAGGCGAAAA 25845 28 100.0 32 ............................ TATCTGGGCTAAAGCTAAGTCATAGCGGCGCA 25905 28 100.0 32 ............................ TGTTCAGGTACTTATCCGCGCTTTGAAGAAAA 25965 28 100.0 32 ............................ TATCCAGCAAGTGCTTATTCGAGAAGCGACCA 26025 28 100.0 32 ............................ ATCAACTTTGACTATGCGCCGCAAAGCTACCA 26085 28 100.0 32 ............................ GTACTAGCTTTTTCAATCGGCTTTTTTGTTTC 26145 28 100.0 32 ............................ CCGCCACCACCGCCACCGCCAGCGGTTTTTAA 26205 28 100.0 32 ............................ TATGCTGACTTTGAATCTATTGCCCAAATTCG 26265 28 100.0 32 ............................ TTGCTTGATTGGGCGTACCACATCGTCGTTGC 26325 28 100.0 32 ............................ ACCACGCCGATGATGCGGCAATTGCCGTTGAT 26385 28 100.0 31 ............................ TCTATGCCTGCGTTTTATACTTAGTCTCAAT 26444 28 100.0 32 ............................ TGAATACCAAACGCTGAGCTGATATCGTTGTT 26504 28 100.0 32 ............................ TTTTGCATAGCGTTAAACTCCATGCGCCGCTC 26564 28 100.0 32 ............................ ATTCAAACTGTCCGTCGATCAATGCGCCTGTA 26624 28 100.0 32 ............................ TTGTTGTTCTTATGGGCGTTACGTCATGATCT 26684 28 100.0 32 ............................ GTTACTTAGACTGTAGCTATGAATACTTGTCG 26744 28 100.0 32 ............................ TTTCTAATGTCCACGCAATCAAGCCTATCAAT 26804 28 100.0 33 ............................ AATACCGCCAATGACAGGACCAAGCGCTTGCTT 26865 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATGGTTGCAACAGGCGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TTTTGAGTGATGACATCAGCAAAGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31-1078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCH01000057.1 Vibrio navarrensis strain 2232 contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31 28 100.0 32 ............................ GTTGACCGACTGACCGGGCGCAACTTCAAGCG 91 28 100.0 32 ............................ AAGCGCCGGGCGTATCCCAATGAGCTGATAAA 151 28 100.0 32 ............................ TATTCAAGCTTATGAGCAACTGCAAATACCTG 211 28 100.0 32 ............................ ATTGAAGCTTACTACAGAAAGTTAAATGTAAT 271 28 100.0 32 ............................ TTATCCAAGCATACGGCAAACTACCTGAGTAA 331 28 100.0 32 ............................ TCGATAACTTCGAGTCTGCCGGATTCAGCAAA 391 28 100.0 32 ............................ GTGAGGATTTTAGATGAAAACAATCACAATTA 451 28 100.0 32 ............................ ATGAGATTGCTCTACTAATGAATGAAAAGTTT 511 28 100.0 32 ............................ TTGCCAGCAAATCCCGACCGCAAGAGCGTGAA 571 28 100.0 32 ............................ AGAACCGGGACGAACGCCGCCATGCAAAGGTT 631 28 100.0 32 ............................ TCAACCCCAACCAGACAATCAAGCGCCTGTTG 691 28 100.0 32 ............................ AATTATGCGCGCGTCGGGTCAAACCTTCGTCA 751 28 100.0 32 ............................ CACACCAACAGATGCTGCTAGGGCAATTTCAG 811 28 100.0 32 ............................ TTGAGCTGACCTACCGCATCGTGTTTATGGCC 871 28 100.0 32 ............................ TTATCAGGAACGAGTGTTGCCAGCTCGTCGAT 931 28 100.0 32 ............................ AGTTTGCGCCGGGCTAACTGCGTTTTACCGCT 991 28 100.0 32 ............................ ATTAGTACAACTCCGACAAAGAATCGGCTAAC 1051 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATCTCGCTAATCGTGCCAATCCAACGGG # Right flank : AACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAGCATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCCCCCGTACCCCAAGCCGTACCCAGAGCGATTTTTGCTACAATTAAAAACCGTTTAAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGGTGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAGAATTTCGAGGTTCTCGAGCAGGGTATCTGGGTTGCACGAAATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCTACATCCATACCTGCGCGTGGAGGGTCGACAAAAATCGTATTACAGTTGTAGCTCTTCAAATCTATGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTGAATTCTTCCGCTGACATACGGATGATCTGCACGTTCCCAATTTTGTTGGCGGCAATGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54-1098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCH01000100.1 Vibrio navarrensis strain 2232 contig100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54 28 100.0 32 ............................ ACAGTCAAAACTAAGAAGTGAATGAAGTTCGG 114 28 100.0 32 ............................ TAATCCGGACCCTGACCCGAATCCGGACCCTG 174 28 100.0 31 ............................ ATCATGGCCGAGCCAATTGCAGCGATAGCCG 233 28 100.0 32 ............................ TGAGAAAGGAGTCAGGAAAGATAGAGTTATCC 293 28 100.0 32 ............................ ATTTGGTCGGCAATCCGGTTGGTGAATCTATC 353 28 100.0 32 ............................ TTAGCAACTGGTGTCGGCAAGTCCGGCAATGT 413 28 100.0 32 ............................ TCTAGAGCATAACGCCCGTCACCAGATTCATA 473 28 100.0 31 ............................ AAGCTTTCCGCTTACCTGAAAATCCAAACAA 532 28 100.0 32 ............................ TACTCAAAGGCACGTTCTTGCTCTGCCACCGA 592 28 100.0 32 ............................ GTTTGGAGCCTAAATCCTCCCCTTGTGATTTG 652 28 100.0 32 ............................ GACTGGAACGTAAAGAGCGAGCACAACAAAGT 712 28 100.0 31 ............................ TAACCGCCGCTTGAGTAACAAGACGACCGTG 771 28 100.0 32 ............................ TAATTGTTCAAGAATGGTTTTTGCAATGATTT 831 28 100.0 32 ............................ GCGCTAAAGATTTAAGTTTGGCCGCTAAACTT 891 28 100.0 32 ............................ GCGAACGGTGTAAGTGTCTGACGGGTCCAGCA 951 28 100.0 32 ............................ TTCTGAATAAAGTCGTAAATCTCTGGTTTAGT 1011 28 100.0 32 ............................ CAACTGCACGCGAGTACTCGAAAACTCAACCT 1071 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCCGCACAGGCAGCTTAGAAAGCTACGGTTCTTGGGCAATAGTGACAAGTTCGG # Right flank : TGTAAATACCTACAACACTGCGCCTCATGTGGGTTCACTGCCGCACAGGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1253-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCH01000092.1 Vibrio navarrensis strain 2232 contig92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1252 28 100.0 32 ............................ GCGCATGTCTGATAGTGGTTGCTTTTGTTCTG 1192 28 100.0 30 ............................ TCTGAGTTTGACGGTAAGAACCTTCCAAAT 1134 28 100.0 33 ............................ GCATAACTGACTTTGCCTAATTGCCATGCTGTC 1073 28 100.0 32 ............................ TTCGGCGACTGCCTTCCAGTTTTGATCGATGT 1013 28 100.0 32 ............................ ACCTATCTACTACGGCCGCGGTAAATTCAGGT 953 28 100.0 32 ............................ GCAAGAATATCTCTAACCGTTGATGACTCGTT 893 28 100.0 32 ............................ ACTTTGCCTATCTGTTCTTCGAGTTTGTCATT 833 28 100.0 32 ............................ ATGAGCTACCCGGTGAAGGTTTTTGATACCCT 773 28 100.0 32 ............................ ATTAGTGAAAGAGCACGCGTTTTTTGCCCTCG 713 28 100.0 32 ............................ CATACCCGCACGCAGGATGCACGGGCCATCAG 653 28 100.0 32 ............................ CTTACCTGTTTTTAGGCATATGCCCAAATCAG 593 28 100.0 32 ............................ ACCCAAGGCAAAAACCCAACCTATACCCTAAC 533 28 100.0 32 ............................ TTTAATTGCCGATGAAATAAACAAGATCATTG 473 28 100.0 31 ............................ ATTTGCGATTTGGCGCATATTATTAGATTTT 414 28 100.0 32 ............................ CATCAACACCGCAAGAGGCATTTGAACAGGCA 354 28 100.0 32 ............................ TGACGCGCCGATTGAGCATCTACATCCTAATT 294 28 100.0 32 ............................ GCAAGAATATCTCTAACCGTTGATGACTCGTT 234 28 100.0 31 ............................ AGTCAGATTTTGCCAATGTTTATCTGCATGA 175 28 100.0 32 ............................ ACTACACAATGTGATGTTTTCAACTGTAAAGG 115 28 100.0 31 ............................ TTTCGCAATAAAAAAGCGGCGACAACTCCAG 56 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTTAGAAAATACACATATAGCCAACTAAAAAGAAGA # Right flank : AAATCTGCGCGGCATGCAAGGCACGGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //