Array 1 199308-197875 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGN01000007.1 Salmonella enterica strain BCW_5910 NODE_7_length_304652_cov_3.60162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199307 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 199246 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 199185 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 199124 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 199063 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 199002 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 198941 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 198880 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 198819 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 198758 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 198697 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 198636 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 198575 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 198514 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 198453 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 198392 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 198331 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 198270 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 198209 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 198148 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 198087 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 198026 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 197965 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 197904 29 93.1 0 A...........T................ | A [197877] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216326-215443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGN01000007.1 Salmonella enterica strain BCW_5910 NODE_7_length_304652_cov_3.60162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216325 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 216264 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 216203 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 216142 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 216081 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 216020 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 215958 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 215897 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 215836 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 215775 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 215714 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 215653 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 215592 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 215531 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 215470 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //