Array 1 443-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBG01000122.1 Campylobacter fetus subsp. testudinum strain D6856 contig00125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 442 31 96.8 35 G.............................. ACTACAGGTACATTTATAACATCAAATAATAATTT 376 31 100.0 35 ............................... AAAATATTTACAACTCGATTTATTAAATTTGTTGA 310 31 100.0 35 ............................... AAGCATAGATTGCGGCTAATTTGTCCGTGGGATAG 244 31 100.0 35 ............................... TCTCTTAATGCAGCTAAGATATCATCTATACCTTT 178 31 100.0 35 ............................... TATAAAGAACTAACAGCTCTCTAGTTTCTGCTGAT 112 31 96.8 34 A.............................. CGTTAAGCCTTCTATAAACGAGAATGAAATGGCT 47 31 90.3 0 A...............G.............T | ========== ====== ====== ====== =============================== =================================== ================== 7 31 97.7 35 TGTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AGCCTCGTAAAACATCTTGTCGCTCTCTTTTT # Right flank : TAAAGAAGCGTACGTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 37-1776 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBG01000075.1 Campylobacter fetus subsp. testudinum strain D6856 contig00075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 37 .............................. TTCGGCTAGGTCTACCGTTGGCATTACTTTAAAATTT 104 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 169 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 234 30 100.0 35 .............................. ATGTCAGAGCATTTATAAAAGCCTAAATTAGGCTT 299 30 100.0 36 .............................. TCCAAAAAAATGCTAAAGCTTTCACTACTTGGAAAA 365 30 100.0 36 .............................. TTTCAATCCACTTTAAAACTCTATTTTTAAAAAACT 431 30 100.0 36 .............................. TTTGCAGACTGCTGTCGTCCAGCTCTGAAATTTTTC 497 30 100.0 36 .............................. TTGTTAAGTCCCAAAAATCCGGACTTTTAGTAATAC 563 30 100.0 36 .............................. TCAAAATTCGCCGTATCTTTGGAGTTTGGCGGTTCT 629 30 100.0 37 .............................. AAATTTAGCAGGTTTTATAGGACATTGCGTTGTGGAA 696 30 100.0 36 .............................. TTGATGAAAATGGCGAGAGACTTTTAACAAAGGCGG 762 30 100.0 36 .............................. TTGATGAAAATGGAGAGAGACTTTTAACAAAGGCGG 828 30 100.0 35 .............................. TCTTGGCTTCCATTCCAAAAGACCACATTAGCCAT 893 30 100.0 35 .............................. AGGCTTAATACAACTTTTAGCAATATTATTATAAA 958 30 100.0 35 .............................. TTTTTAAATCAATATTCTTATTTTTAATTTCGCTT 1023 30 100.0 36 .............................. GCGGCATCTTTAATGGCTTTTTTATATGTGTCTAAA 1089 30 100.0 36 .............................. GCAAATTCTCTAGAAATAGAAAATCTTTTTCTACTC 1155 30 100.0 36 .............................. CTTTGAGCATTAGTAATACTCTTAGAAGTAGTAAGA 1221 30 96.7 35 ...............G.............. GCTGTTTTCATCTTGTCTCCTTTTTTTCTTAAAAT 1286 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1351 30 96.7 36 ...............G.............. TCATAGAATGTGTTTTTATTGTACTTTCTAGCAGGT 1417 30 96.7 35 ...............G.............. TAGCAAACGCACTTTTAAAGGCTGGAGACGCTATA 1482 30 100.0 36 .............................. TAGTTAGATTTGCGTTCTATTTTATAGATAGTAACG 1548 30 96.7 37 .........................T.... TTTTATATCTAAAATCATCGCTTAAATGACGTTTATC 1615 30 96.7 36 ...............G.............. AGAGAAGTTTCGAAATCGACTTCTGTTTTAGCGTCG 1681 30 100.0 36 .............................. CCTTGATTTTTGTATAGAGTTGGTTTTATGTCAATC 1747 30 73.3 0 ..........C....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAGTAACTACGCTCTTGATAGCTTTAAGGCTCTAGGG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAATGCTAAAAACATAAATGAGAAAAAGGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAACAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 4175-5190 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBG01000059.1 Campylobacter fetus subsp. testudinum strain D6856 contig00059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4175 30 100.0 35 .............................. AAAATAAGAGAACACGAGGCCGATTGTGGTGGAAC 4240 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4305 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 4372 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 4438 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 4502 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 4567 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 4633 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 4698 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 4764 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 4830 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 4896 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 4962 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 5029 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 5095 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 5161 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.4 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CGTTAAAACTTCAAAGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1591-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMBG01000088.1 Campylobacter fetus subsp. testudinum strain D6856 contig00090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1590 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 1524 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 1458 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 1393 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 1328 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 1262 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 1196 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 1130 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 1064 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 998 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 932 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 867 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 801 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 734 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 668 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 602 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 539 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AGAGAAGCAAGGCTTAAAAATGTTCGCAGATGGT # Right flank : CATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //