Array 1 30860-27842 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJSG01000008.1 Vibrio cholerae strain CRA_S9 NODE_8_length_170289_cov_39.0194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30859 28 100.0 33 ............................ CAAAAAGCCTCTGTTATGCCTTCTGATTTTTTG 30798 28 100.0 33 ............................ CAGAGCGTCAGGTCATCCGCAGTTTTGCAAACC 30737 28 100.0 33 ............................ TGAGAATACGCCTAGCGATACAATGTACCGTAT 30676 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 30615 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 30554 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 30493 28 100.0 33 ............................ CAGTTACCTGACCAGCAAACAAAGCTTCAGCAG 30432 28 100.0 33 ............................ CGCTTTGCTATAAGCGCGGCATACTTTACCCCG 30371 28 100.0 33 ............................ CCATCCTTTCAGCAAGGGTGAGAAGGCTTGCAA 30310 28 100.0 33 ............................ TGCCTATTGTGTATCGGTCCTGACCGCTTTGAT 30249 28 100.0 33 ............................ CAGGCGAAACGTCTCTCGCACGTAAATCAGGTC 30188 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 30127 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 30066 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 30005 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 29944 28 100.0 33 ............................ TCAATTTTCAGTGCAGAGTTTGCAGCCGGAATG 29883 28 100.0 33 ............................ TAAAGCTCTTTATACTCGCCTTGTCCAAACATC 29822 28 100.0 33 ............................ TAAAGCCAAGCTCTAACGCTTCTGAGGCTGTCA 29761 28 100.0 33 ............................ CAACTCACGCGCAGACTATGACGACATACACAG 29700 28 100.0 33 ............................ TTGACTTGGCCGTGAAATCACCAGAACTACCGA 29639 28 100.0 33 ............................ CAGACTCTTTTTTATCGCTAATACCAACTGGTG 29578 28 100.0 33 ............................ TCTATCACCAATAGTTTCAGTCTCTTTTACTAT 29517 28 100.0 33 ............................ TAAAAGAAGGGCTTCAGTAGATGGGCTTTCAGC 29456 28 100.0 33 ............................ CACTGTACTGTCCAACGTGCCCAGTGTAGCGGT 29395 28 100.0 33 ............................ TTGAGATAGAAAAATCAATATGACGCGCAGCAG 29334 28 100.0 33 ............................ TTGGCTGTTTGAGTGTGAGGATATACTTGTCAT 29273 28 100.0 33 ............................ TACGTTTTGGTGCAACCGATTTAAAGCTATCTT 29212 28 100.0 33 ............................ CAGAATTCACAATGTTTTTGCGCTCATCAGGCG 29151 28 100.0 33 ............................ CAAGTCGCTCTTTACACTCGATGCAGTGACGCG 29090 28 100.0 33 ............................ TTCTACGCCTTGGAGCCGAAAAATTCAGAGAGC 29029 28 100.0 33 ............................ CCAAACCAAGCAAGTTTGGAAGCCTGATACACT 28968 28 100.0 33 ............................ CAAAACCAATGCTAAACTATACCAATAAACATT 28907 28 100.0 33 ............................ CACACAAAACCGTGATACACTTCACATAACGAA 28846 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 28785 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 28724 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 28663 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 28602 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 28541 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 28480 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 28419 28 100.0 33 ............................ TAAAAACATTGATGCTTGCAGGATGGCTTTTCA 28358 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 28297 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 28236 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 28175 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 28114 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 28053 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 27992 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 27931 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27910] 27869 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //