Array 1 2531385-2530162 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2531384 36 100.0 30 .................................... CCCATAAATAACCTACAATTGCTCCTAATA 2531318 36 100.0 30 .................................... CCAAGGTAGCGGAGAAAATCCCGGGGACAA 2531252 36 100.0 30 .................................... CGATTTTGACTCTGGGTAATTACCCGGAGG 2531186 36 100.0 30 .................................... CAAGAAGAAGAACCAGGACTCTTTGATAAT 2531120 36 100.0 30 .................................... GCTTTAAAGTTGAATATGATTGACCGTCTT 2531054 36 100.0 30 .................................... ATTATTCACCATTGTAAAAGGTATAGCTTT 2530988 36 100.0 30 .................................... TGTTATAATTGGAATTATCAAGGATGTATG 2530922 36 100.0 30 .................................... TTTATTACACGGACGGAAATCCTAACATAA 2530856 36 100.0 30 .................................... ATATCCCTACAAATATAAACAATATAAGAA 2530790 36 100.0 29 .................................... TGCACGTGCTTTTTGTTGTTTTGTCAGCG 2530725 36 100.0 30 .................................... TCAGGAGATTATGACTATTTAATGCAGGTA 2530659 36 100.0 30 .................................... TTGAGTTGCGATAATTCTTCAAGTGCTTGA 2530593 36 100.0 30 .................................... TTTAAGGAGGTGATACATAGTGATCTCAGC 2530527 36 100.0 30 .................................... ACGCTGGATCATAGCTTCAGCCCATTTGAC 2530461 36 100.0 29 .................................... TCTGAATCACTGTCCTCATAGGAACCGAT 2530396 36 100.0 30 .................................... ATTTTTTACGAAATGCAAATATCCAACAAG 2530330 36 100.0 30 .................................... TAAATGGATAAGCTGTAAATTCAACAGTTA 2530264 36 100.0 30 .................................... AGTATCCAATTAATACGTTCTTCTGTTATT 2530198 36 94.4 0 .......................T....G....... | A [2530174] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTTGGCACTCTTTCAGTTTTTGGTATAGGAAAAC # Left flank : TGTGCCGAAAGAGGGATGGATAAGAAGCGTATCATTATTGTGGAGCTTCCAGAATTATACGCGTCTAAAAAGGAATTGGCTAATTTTATTGGGATGGTCCATGATTTATTAGAAGTTGGAACGCGTTTTATTATTGTAACAAATTCAATTGCACAAGTAGGAAATAGAAACTATATATTTAACGGAAGAATTATCAATAATGCGATTTTGGAGAATATGAAACAGATAATCCTGTCTGAGCTACCCTTTTATTGCCAAGATGCTATTTATAGGGAGGTTCAGCAAATGGTTATTGATCATGTGGATAAATATGGTGATGGAACTCTAGAAAATGCCTTTACCCACAATTATCAAGAATCAGTGATTGCAGTGTTGTATGTTATCTCCAAAAACTTAAGTATTGATTTAAACCTTGATTTATCAAAGGTTTCGCCGAATATTAGCAAGTTCTTGAGTTCATATTCCTAAAACATTTTAGCCTATGTTATAATAAAAATGAG # Right flank : CGATATACCGTGTATGTATGGAAATATAAAATACATTAGACTAATATTAGGAGTTGATTCTAATGGAAGAAAAGCTATTACAACAAATACTAGAAAAGCTTAATTCCCTAAAAGAAGGGCAAAATGTCCTTGAAAAAGGGCAAGAGGAAATCAAGGGCAATATCAAGGAATTGAAAGAAGAACAGAATAAAATCTATGAACTTCTAGTGACAGTAAGCGAAAGAGTAGATGAACAACTGGATAGTATAGAAGCACTTTCGCAACGTGTTTGGAATACTGAAAAAGATATTTCAAGAATTCAAAGGAGAGCTGGATTAAAATAATAACCAATTAGGTCTTGGCTACAGTCCCGTATCCCGTAACTAAAATAAGATTAGGGATTTCCGTTTTATCTTCTGAACGTAGTTGGGATCATTAGTGAAAATTTGTTTGAAACTTATAGTTGAAAAAGGTAGCCCCGTATGATCTGTCTATTTGGGGGCAACCTTTTCATCCTCACG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTCTTTCAGTTTTTGGTATAGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 3821787-3823112 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3821787 33 100.0 35 ................................. TCCATAGTAGAATAGTCACCGTCAATGCGTAGAAC 3821855 33 100.0 38 ................................. TTGCCTGCATTTTATATTGTCGATTGGATTGGAGTTAG 3821926 33 100.0 34 ................................. GTCCATCATTTCCCCTCCCAGCTGTCCATCCCTT 3821993 33 100.0 35 ................................. ATCCAAACGCTGACCATGTTGGACCTTAGCGACTT 3822061 33 100.0 33 ................................. CGATACGATTCGCTGGATGCCGCGAGGATTATG 3822127 33 100.0 35 ................................. GCTGCATAAATTCGAGTGATTAATCCGCAAGCCCT 3822195 33 100.0 34 ................................. TTATTCGAACAATGAATAGCGTCCCTCTCTTCCT 3822262 33 100.0 35 ................................. CGATACAGCTTTAGTGGCAATGAGGCCATGCTGTT 3822330 33 100.0 35 ................................. GAGACAGCTATGGGACAGCGTTGGGACAATAATAA 3822398 33 100.0 37 ................................. ATTCCATTCAACATAATCAATCGATTTATGCTCTACA 3822468 33 100.0 35 ................................. ATTTAATTCTTTGATCTTATCTAAAACAGAAACAT 3822536 33 100.0 35 ................................. AAGGTAATGAAATGGCTAGATGAAAAAGATAAGCC 3822604 33 100.0 36 ................................. GAAATTATAAAAATACTCAAAATCAAATCGTCCCGA 3822673 33 100.0 33 ................................. TGTAGCGGAAGCTAACATACCACTGAGGTAATC 3822739 33 100.0 35 ................................. TGATTTAGAATTGAACTTTAAAGCACAACCAGAGA 3822807 33 100.0 33 ................................. ATCAGGAAGGATACCAAGCTTTTCTAACGATTT 3822873 33 100.0 38 ................................. GCCGTAGAAACGCCATATTGAAGCATCCTGAACACGAA 3822944 33 100.0 35 ................................. TAAATAAAAGGATATTTATCTAACAACTTATATTC 3823012 33 97.0 35 ..................C.............. ATTCAATTGATAGTATTTTATTTTCTGATTTTTTA 3823080 33 81.8 0 ..........A....A..........CAA...A | ========== ====== ====== ====== ================================= ====================================== ================== 20 33 98.9 35 GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Left flank : ATAAAGGAATAGAACAGGGCTTCCAAAAGGGAATAGAGCATGAAAAGAAATTACTTGTTAACGAAATGCTTAAGAAGGGTTTACAGGAAGAGCTGATTGTGGAAATATCGAAGTTAAGTGTGGAGAAAGTGAAAGAAATGAAAAAAGAGTTGGAGGAGTCTAGTGATTATTGAGGCGGTTTGATAGGTGGAAAAAAGAAGCTATTTTACGAATGTCAAATGGCGGGTATTTTCCGCGCTCAATAAGCATGACTTCAGCAGGAAATACGACTTTAGACATCAACATTTATGTCAAAATCTACCTGCTCTAGTAGTTTTAAAAGTGACAAATGCATTCACCCTGTACGCGAACCTGAAGTGAACATGAAATCCTAGGGAGGTTCGCGCAGTATTTCAGTGATTATTCCGTTATTATGAGATAAAATGATATTGAAAGTGTAAAATGTTTTCTTAATAAACAGGATATAGTGAATTGAGTGTGTTTATTCTCTATATCTTGCG # Right flank : ATATATTATAAAAAGGATTAGAAACTTTTTCTTGCTATCTCTCATGAAGAAAGAATAAGTTGTATATAAAGGCGTACGCTGGTAAAATGTTCCTGTATTCTTGTCTATTACTTTTATAAATGGTAATAGTGGATTGAAATAATCTTTTTATCATGTAAAAAAGACCTGTCGAAAATGAAGTGCACCCCAAAAGTTAGAGTCAAAATCTAACTTTTGGGGTGTTTTATTATGGCTAAATATACAGATGATTTTAAGGTGATGGTGGTGCGTGAATATCTAGAAGGAAAAATAGGATATAAACGACTGGCAGAAAAACATGGCGTGAAGTCGAAGAAACAGGTCATCAATTGGGTCAACGCATACAAGAAATTTGGCATGGAGGGATTATTCCGAAAGAAAAAGAATGCATCTTATTCTGTTCATTTCAAGTTGGATGTATTAAGCTTTATGAAAAGAACAGGCGCTTCACAGACAGAAACAGCACTCCATTTCGGATTGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3833477-3834589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 3833477 33 100.0 33 ................................. CGCTAATTTATTATAAAAACGTATTTGTATCTC 3833543 33 100.0 34 ................................. TCTAATTCTTTATAAAAATCGTTTGCAGTCTCCC 3833610 33 100.0 35 ................................. TTGCCCTGTCTGTACGATTTTCCCTTTATGAACTA 3833678 33 100.0 34 ................................. GGGATGAGCTTGCCGACCCCAATCCGCACAAAAT 3833745 33 100.0 35 ................................. TCGTTTAGCCTGCGTTCGAGGCCTGCGAGTATCTT 3833813 33 100.0 36 ................................. AACATTTTCCAATATGATTACTCTAGGCCTTACAGT 3833882 33 100.0 35 ................................. TTATTTCCTTGAGTACCTTTACTATGATGGTGACA 3833950 33 100.0 33 ................................. ATCTTTCCAGTTGAATAAGTCCAAGCTTTCTAC 3834016 33 100.0 33 ................................. TCCACCACTCGCAAATTCTTGATTAAATTGATA 3834082 33 100.0 35 ................................. TCATCCTTGCGTTAGACCGGGGCAAGTCGGGCTAC 3834150 33 100.0 37 ................................. TTGATTGAGAGACTTCTTTATTCGAAAGTGGGAAAAC 3834220 33 100.0 36 ................................. TTTAAATCTATGGAAGTGGATGAACTAGCAGCAACT 3834289 33 100.0 35 ................................. TATCTGTACGCTTATTGATTTCTATTTGTTCTTCT 3834357 33 100.0 34 ................................. GATTAACGGAGAAGGTTGGGGGATTTTCCTATTA 3834424 33 100.0 35 ................................. AGAATTAATTGATAGTGGTATGTTGTTGTTGGGAT 3834492 33 100.0 32 ................................. TTAATGTCTCTTCTTGCTCATCATTGGAAGGA 3834557 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 17 33 100.0 35 GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Left flank : ATCTTGACCGCTCCGCTGCACGCGGTCAGATGGCGACACGGGGCCTTTATATTTTTGAACATGAAAGTGAGTATGGCAATGCACCTTCACATACACTCTTTGAAAAAATTAATATTAAAAGAAAGAACGACGTAGAAGTAATTCGCTCATCGAAAGATTATACAGTGGAAATTGATCATGACATTCCTGCCGGTGTTCAGCTACACGAAGTCATTACTTTATAATGGCAGTAGCCAGAAATCGAGTTTAACAGTACACTTATCATAGGATAAGTACGAATTTGAGCCTAGTGATCTTTTAAAAATATAGCTACAACGACAATTAGTTTACTAGTACTTTAATGTGCGAACCGTAAGTGAACATGAAAACCCTGAGAGGTTCGCGCAGTATTAGGGTGTTTTTGCTAATGAAATGGTATGAACTGTAAAGGTATAGCAGGTCTAAATTATTTTTAAATCAAGGTGAAGTAGAATTGGTGGAAGATTTTACTATATCTTGCG # Right flank : TAGCCTTGGGTTTACGACAATTTATTAACAAAAAAAGTCACTCTCTGTCAAGTCCACCATATTGTGTAAATTCATTTCCTCGGACTTACGCTGTTTATCATTTTATTGCGAATTTTGATTATTGAAGGGGTACCCCTTCAATAATCAAAATTCGCGCGCTCCGCGCTACCCCCTATGCCTTTGACACTTTTTTACCAGATTGTTCATCCGCATACTCCATTAAAACAGCTCCAATTAGCCTAAACGCTGATTGGGTATTTGGGAAAATCCTAATCACCCTTTCCCTACGCCGGACTTCCTGGTTCAGCCTCTCCAGTGAATTTGTACTTCGTATGTGTTTATGATAGTTCTCTTCCTCATTTAAGTATTGAATGGCATCTTCGAAGCCTTCTTCTAAGATGTTAATCGTCTTTTCCAATTTCGTTTCGGAGCCAAACTCCCTTAAAAAGTCCTCTTTTAACTTCCTGGCATCTTGAGGCTTGACCACTTCAAAAATCCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3836021-3837689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3836021 33 97.0 36 C................................ ATGAAAAGAATTCTTCAATTATCATTCGCAAAAACT 3836090 33 100.0 35 ................................. GAATTAACAGGAGATGAAACTCTTAAATTGATGGC 3836158 33 100.0 37 ................................. GTCCACACGGATATGCAAGTAAGCCATCAGGAGAACC 3836228 33 100.0 38 ................................. AGCTAGACGATCACTGACCAACATCTGCTTTACTAAGC 3836299 33 100.0 33 ................................. AAACTGATAAGAAAGAGGGCGATTCTTATAAAC 3836365 33 100.0 36 ................................. AACCTATCCCCGTTAAAAAGTATTTCTTTGATGACG 3836434 33 100.0 34 ................................. AATATCGTCCGCGCGCTTTAAGCACGCTCGGTGT 3836501 33 100.0 33 ................................. CTGTAAAATATCATCGGTAATCATTCAGATCAC 3836567 33 97.0 35 ....................A............ TGTATATGTCTTGAAGCTACTGTATAACTTACCTT 3836635 33 100.0 36 ................................. TGTTTCCGTATCGTTCGATAGCTCCACACCGTCAAA 3836704 33 100.0 33 ................................. ATCGAAGAAAAAGGGCATAGGCCCATTCGTTTT 3836770 33 100.0 36 ................................. AAATCATTCATCAGCCTGGCAACATCGTTTATCACA 3836839 33 100.0 35 ................................. ATCACCTGCATGAGCCTTTTTAATTTTGGTATACT 3836907 33 100.0 38 ................................. AGCTGTGTTTGTGTTTTGTGAAGATTCCAAGTCATCAC 3836978 33 100.0 35 ................................. TTCCAAATCGGTTTATTTCTCTCTTAAACGTATCT 3837046 33 100.0 33 ................................. GTCAATAGAATCATACGGGTGTAGGATCACATC 3837112 33 100.0 36 ................................. GGAAGATTTAAACCTATCCAAAGGAACGAGAAACCC 3837181 33 100.0 35 ................................. AAGATGTTGAAGAAGTTAAAAAACAGTTGAAAAGT 3837249 33 100.0 34 ................................. AAAAAGGTAGATACATAGAGTCTTTTACACTTAA 3837316 33 100.0 37 ................................. TCAACTACCGCCGTCCAGACAGCCATTACCTTCTCCC 3837386 33 100.0 35 ................................. ATTAGTGGCCTCCTTAACAGACTTCTTTAGATACC 3837454 33 97.0 36 ......................C.......... ATATTGGGCCCTATAATCATTTGCATCCGTTTCAGC 3837523 33 100.0 34 ................................. TCCAAAAAGTTAATAGGAGCGTTCCACCAGTATT 3837590 33 100.0 34 ................................. CAGTAGTCAAACCAGACATATCGACAGGTTTATA 3837657 33 81.8 0 ................GA...A..A......CA | ========== ====== ====== ====== ================================= ====================================== ================== 25 33 98.9 35 GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Left flank : GACTTTGAGACTTTTTCTCCACAAAGTTCTTTGACAATATTTTTCACTTTCCGGGTTGATACCCCGTTGACTACCATTTCAAGCATAGAAAGGACGAAGGCCTGATCACAACGGGCATATCGTTCGAAAACCGATGTAGAAAAGTCCCCATTACGAGTACGTGGCACTCGCAACGTAATTTTCCCTATACTCATAAGGAGATCACGCTCATAATAGCCGTTCCGGTAATCCTGTCGTTTTGGCGATCTTTCATAAGCCTCTGTGCGCAAGTGCTCATCTCGTTCTTTTTCCATGAATTCATTTAAGACCAGAACAATGGATGCTTTTACAACGTCGTCCAGATCAGAATTCATAAGTGTTGCTTTTAAATAGTCCATATTAAGGTTAAACTGTAATTGAGTCATCTTAATTCCTCCTCTTTGTTTTCTTCGCTGATAACATTGTAGCCACGAGGAATTAATTTGACTCCTTTTCTTTTTACACAATTATATGGACTTAAT # Right flank : ACAAAGTTTAAAAATACTTTTGCCACCACATCTTATATTGGGAGTGACCATTGTAATTTTCCAAGTACTACACACCAATTGTCCCTCTCTACACTAAACTGTTAAACATTCGGTGTACTTGCCAATACGACCTCAACAACAGAGAGGATAAATAAAGATCCCTTTAAAATCCAACCCTTTTTACATCACAGTTCTGATAGACTGAGTTGAGCCAAATGCGGCTATTTGTTTAATTGCTCAGTGGAACGCTATCTACAGTAATGATATGAATTTTCAAAACAATATTTGTGAATATATAAGAACTAGTAGAAACGCTCAGTCTAGTAACTTAATATGATATTTTTTTAGAAAAATTACTTTAAATTAGTTATAGCCATGCTTTTTTGATCAATTTTACCAACATTTAGTAAGTTATGATGGTATACTAGTAATTAGGAACTAAAATAAAACTAAGTAATATTATCTATGAATAGGGATGTGATCGATATGTTTTTGGCACA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3846171-3847086 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3846171 33 100.0 34 ................................. CTTACGTCCGTCCTCATACTCGATAATCATTTTG 3846238 33 100.0 38 ................................. AGTCCTGTGGCCATTTCAACTCCAGTGCTGGCACCACC 3846309 33 100.0 34 ................................. GCTCAATTTTTTCCCCCCTCAATCGTTAAAGGTC 3846376 33 100.0 35 ................................. TTTTAAATTCTTCGATCCTTTTTAGATCTTTTTCC 3846444 33 100.0 37 ................................. TTGAAGATGGCAAGCTTCCTGTCGTAAATTTTGATAA 3846514 33 100.0 34 ................................. CTCAATCAAGGGGATGAGCATATCATATATTCGA 3846581 33 100.0 33 ................................. AATTTTTTTAAAAAATAAATTGCTACACTCCGT 3846647 33 100.0 33 ................................. CCTCTAATGCATCCAAGCTTTTTAAGAAGGATC 3846713 33 100.0 36 ................................. GATTTGAGCGTTGCGATTCTGCCCATGCGCAATCTG 3846782 33 100.0 34 ................................. TCCCAAGTCGATCATCGTCCGAGTAAATCCGAGG 3846849 33 100.0 36 ................................. TTATGGGATTATCAGAAAAAGCTTACTCAATTTACT 3846918 33 100.0 34 ................................. AATAATGATTCCCCTAGCGTATGAATCAAAGTGC 3846985 33 100.0 36 ................................. GGCTTTCTAACCTCACTGACGCGATAGCCGTACATT 3847054 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 14 33 100.0 35 GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Left flank : GTGGGGATCTCGATGCATATCCCCCAATTCTAATTAGGTAGGTGTTCACAATGCTTGTTCTCGTTACCTATGATGTGGAGACACAAACAGATAGTGGCAAAAGACGCTTGCGGAAAATTGCCAAAAAATGTGAAGAATATGGTGTTCGAGTACAAAACTCTGTTTTTGAATGTATCGTGGATAGCACACAATTACGCCAACTCGAATTTGCACTTGAAGAAATCATTGATCCAGATGTTGATAGTTTACGATATTACCGCTTAGGTAATAACCATGATACAAAAGTTAGGCATATAGGTGCAAAGCCATCGATAAAAGTAGAGGATCCACTGATTTTCTGATGTGCGAACCTGAAGTGAACATGAAATCCCTGGGAGGTTCGCGCAACTTTTGAGCAAAAGATGCCTTATAGTATGATAAAACTTGTTTAAAAATATTTAGTTAATGGTTTGAAAAACAAGGTATAGTGATGGTGGTAGAAGTAATCTCTATATCTTGCG # Right flank : TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3851088-3853823 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3851088 33 100.0 34 ................................. CTTACGTCCGTCCTCATACTCGATAATCATTTTG 3851155 33 100.0 38 ................................. AGTCCTGTGGCCATTTCAACTCCAGTGCTGGCACCACC 3851226 33 100.0 34 ................................. GCTCAATTTTTTCCCCCCTCAATCGTTAAAGGTC 3851293 33 100.0 35 ................................. TTTTAAATTCTTCGATCCTTTTTAGATCTTTTTCC 3851361 33 100.0 37 ................................. TTGAAGATGGCAAGCTTCCTGTCGTAAATTTTGATAA 3851431 33 100.0 34 ................................. CTCAATCAAGGGGATGAGCATATCATATATTCGA 3851498 33 100.0 33 ................................. AATTTTTTTAAAAAATAAATTGCTACACTCCGT 3851564 33 100.0 33 ................................. CCTCTAATGCATCCAAGCTTTTTAAGAAGGATC 3851630 33 100.0 36 ................................. GATTTGAGCGTTGCGATTCTGCCCATGCGCAATCTG 3851699 33 100.0 34 ................................. TCCCAAGTCGATCATCGTCCGAGTAAATCCGAGG 3851766 33 100.0 36 ................................. TTATGGGATTATCAGAAAAAGCTTACTCAATTTACT 3851835 33 100.0 34 ................................. AATAATGATTCCCCTAGCGTATGAATCAAAGTGC 3851902 33 100.0 36 ................................. GGCTTTCTAACCTCACTGACGCGATAGCCGTACATT 3851971 33 100.0 35 ................................. AAAATAGGGTGAACACCTGAAACATCGGGATTGGT 3852039 33 100.0 35 ................................. ATATTTGCCTTTTGTAGATCGGTGACGTTTGTTTG 3852107 33 100.0 36 ................................. TACTTCTTTTAATTCGATTATCATCGGGTATCACCG 3852176 33 100.0 34 ................................. AATTTCTGCTTTCCTAGCTTCGATGGATTTGAGA 3852243 33 100.0 33 ................................. TAGAAAATGTGCTAGTGCCTATCGGGACGTTTT 3852309 33 100.0 33 ................................. GTTTGTCGGCCGTAGATCGAATGCACAAATTCG 3852375 33 100.0 36 ................................. ATAACAATTAAAACTGTAAGTGGACACTTTAATACC 3852444 33 100.0 35 ................................. TACATATGAGTTATGGCAGATCAAGAATAGAGTTG 3852512 33 100.0 34 ................................. TACGAACTACACTACCATAGAAGGAGCTAATCTT 3852579 33 100.0 33 ................................. TATTCCGTGGTAACTCTTACCTGACCCTACCGC 3852645 33 100.0 35 ................................. CTGCCCCCAATACAGTAGACAGTTTACGTATAAGC 3852713 33 100.0 33 ................................. ATAATGCTCATTGCTTTCCACTCATCTATCATA 3852779 33 100.0 35 ................................. AATTCTTCCTTTATGCTACTTGCCAATAAAACATC 3852847 33 100.0 35 ................................. ATATGCTTGTTTATCAAACCTCTTAGAATAAGCTC 3852915 33 100.0 34 ................................. ACTTAGGTTCGGGCCATACGGACACGTAAAAGGC 3852982 33 100.0 33 ................................. AGCCCTCCTCCCTCAGACTTTTTTACAATCTTA 3853048 33 100.0 34 ................................. AGTTTCTTCAACTGGTTCGTCTTCCTTCTTACTT 3853115 33 100.0 35 ................................. AACAATTGTGAGTGATGTTTCACTTAACCTTTTCT 3853183 33 100.0 36 ................................. TATTATCGGTGGGTTAATTGTTGCTAATAAAGTGAA 3853252 33 100.0 34 ................................. GCACATGTCGCACGTTGGTTCGGTCATTGGTCTA 3853319 33 100.0 35 ................................. AAAAGATGATGAGACAATATCTTTAATGGTATTTA 3853387 33 100.0 33 ................................. CACCATCGTGATATGTTATCTTTATTTTTTGCA 3853453 33 100.0 36 ................................. AGCAGTATTAGAAAGTGATGTACGCATACTATTAAA 3853522 33 100.0 34 ................................. ACAACGTGCAACATTTCTAGGCGAGGGAAAGAAA 3853589 33 100.0 35 ................................. TTCGCTTCAGCTCGTTAGTATCCCAAAAGATTAAC 3853657 33 100.0 33 ................................. ACAAATACACCGTTCACCATTTTTCCTTTGCGA 3853723 33 97.0 35 ....................C............ TATGTATGCACTGTGCACAATATGCACTTTGAAGG 3853791 33 90.9 0 ..............A...G.............C | ========== ====== ====== ====== ================================= ====================================== ================== 41 33 99.7 35 GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Left flank : GTGGGGATCTCGATGCATATCCCCCAATTCTAATTAGGTAGGTGTTCACAATGCTTGTTCTCGTTACCTATGATGTGGAGACACAAACAGATAGTGGCAAAAGACGCTTGCGGAAAATTGCCAAAAAATGTGAAGAATATGGTGTTCGAGTACAAAACTCTGTTTTTGAATGTATCGTGGATAGCACACAATTACGCCAACTCGAATTTGCACTTGAAGAAATCATTGATCCAGATGTTGATAGTTTACGATATTACCGCTTAGGTAATAACCATGATACAAAAGTTAGGCATATAGGTGCAAAGCCATCGATAAAAGTAGAGGATCCACTGATTTTCTGATGTGCGAACCTGAAGTGAACATGAAATCCCTGGGAGGTTCGCGCAACTTTTGAGCAAAAGATGCCTTATAGTATGATAAAACTTGTTTAAAAATATTTAGTTAATGGTTTGAAAAACAAGGTATAGTGATGGTGGTAGAAGTAATCTCTATATCTTGCG # Right flank : CAAAAAGAATGGAGAACAGCGAGAGAAGTGAGCCTAAGATCTAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAATGAACAATCGTTTTGACAAATTAGAGCAAAGAATGTCAACGGCAGAGACGAAAGTGGATCCTCTGCAATCTGACAATTCAGATATAAAAAAGGGACAAGTTCGCCAGGACAAAATTCTTGCGTCGTTAGCAATGAGATCACTAGAACAAGAAACAGAATTACGTGAATTGAAACGAAAAAAGTGAAACACGAAAGCTCGAGTTTCACTTTATTTCTTCACCAAATCATGCTTAAATGCATAAATCGCTGCTTGTGTGCGATCTTGGATTTCCAGTTTGCTTAAAATATTGCTCACATGGGTTTTGACGGTTTTTAATCCGATAAAAAGTTCATCGGCGATTTCTTGATTTGTTTTTCCGGCAGCAATGAGAAGTAGGATTTCATGTTCGCGATTAGTCAGCTGTTCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 3856713-3858360 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831197.1 Bacillus niameyensis strain SIT3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3856713 33 100.0 34 ................................. AATTTCTGCTTTCCTAGCTTCGATGGATTTGAGA 3856780 33 100.0 33 ................................. TAGAAAATGTGCTAGTGCCTATCGGGACGTTTT 3856846 33 100.0 33 ................................. GTTTGTCGGCCGTAGATCGAATGCACAAATTCG 3856912 33 100.0 36 ................................. ATAACAATTAAAACTGTAAGTGGACACTTTAATACC 3856981 33 100.0 35 ................................. TACATATGAGTTATGGCAGATCAAGAATAGAGTTG 3857049 33 100.0 34 ................................. TACGAACTACACTACCATAGAAGGAGCTAATCTT 3857116 33 100.0 33 ................................. TATTCCGTGGTAACTCTTACCTGACCCTACCGC 3857182 33 100.0 35 ................................. CTGCCCCCAATACAGTAGACAGTTTACGTATAAGC 3857250 33 100.0 33 ................................. ATAATGCTCATTGCTTTCCACTCATCTATCATA 3857316 33 100.0 35 ................................. AATTCTTCCTTTATGCTACTTGCCAATAAAACATC 3857384 33 100.0 35 ................................. ATATGCTTGTTTATCAAACCTCTTAGAATAAGCTC 3857452 33 100.0 34 ................................. ACTTAGGTTCGGGCCATACGGACACGTAAAAGGC 3857519 33 100.0 33 ................................. AGCCCTCCTCCCTCAGACTTTTTTACAATCTTA 3857585 33 100.0 34 ................................. AGTTTCTTCAACTGGTTCGTCTTCCTTCTTACTT 3857652 33 100.0 35 ................................. AACAATTGTGAGTGATGTTTCACTTAACCTTTTCT 3857720 33 100.0 36 ................................. TATTATCGGTGGGTTAATTGTTGCTAATAAAGTGAA 3857789 33 100.0 34 ................................. GCACATGTCGCACGTTGGTTCGGTCATTGGTCTA 3857856 33 100.0 35 ................................. AAAAGATGATGAGACAATATCTTTAATGGTATTTA 3857924 33 100.0 33 ................................. CACCATCGTGATATGTTATCTTTATTTTTTGCA 3857990 33 100.0 36 ................................. AGCAGTATTAGAAAGTGATGTACGCATACTATTAAA 3858059 33 100.0 34 ................................. ACAACGTGCAACATTTCTAGGCGAGGGAAAGAAA 3858126 33 100.0 35 ................................. TTCGCTTCAGCTCGTTAGTATCCCAAAAGATTAAC 3858194 33 100.0 33 ................................. ACAAATACACCGTTCACCATTTTTCCTTTGCGA 3858260 33 97.0 35 ....................C............ TATGTATGCACTGTGCACAATATGCACTTTGAAGG 3858328 33 90.9 0 ..............A...G.............C | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.5 34 GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Left flank : GTTTGGACAACAATCTTTTCCGGATGTTTCTTCGTTTTATTGTATTCATATAATCCGTACACGACGGCAAAGATCACAATTAATTTTAGAAAACCAGAAGATAAAACAGGTATAGCGATGAGAATGATCCCAATAATGAAATAAGTGTTTTGCTTTTTTTTCAAATACCTTCCTTGGTAAATCAGAAAGCTCCCAATTAAAAGGGGGATAAATAGCCGCCAATTAAAGAGAATTTCCAAACCGACTCCAATAGCTGTAATGAGGAAAATCCAGCCAATGACGCTTGTTTTACTCATTTTTTTCATTTTAATTTATCCCCCTTTCATTTCATAGAGTAGTGAAAAAAGAAAGGCATGTAACAACTGCCTCTCGTTTCATATGTTAACTGCTCGTAAAAGCTCGATTGGTTTAACTAACAGTCAGTGGGGCTAATCACAATTTCTTGTAGTAAAGTCTCCATGAACAATGTTCACATACCTAACCCCCACNGGGTATCACCG # Right flank : CAAAAAGAATGGAGAACAGCGAGAGAAGTGAGCCTAAGATCTAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAATGAACAATCGTTTTGACAAATTAGAGCAAAGAATGTCAACGGCAGAGACGAAAGTGGATCCTCTGCAATCTGACAATTCAGATATAAAAAAGGGACAAGTTCGCCAGGACAAAATTCTTGCGTCGTTAGCAATGAGATCACTAGAACAAGAAACAGAATTACGTGAATTGAAACGAAAAAAGTGAAACACGAAAGCTCGAGTTTCACTTTATTTCTTCACCAAATCATGCTTAAATGCATAAATCGCTGCTTGTGTGCGATCTTGGATTTCCAGTTTGCTTAAAATATTGCTCACATGGGTTTTGACGGTTTTTAATCCGATAAAAAGTTCATCGGCGATTTCTTGATTTGTTTTTCCGGCAGCAATGAGAAGTAGGATTTCATGTTCGCGATTAGTCAGCTGTTCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //