Array 1 1093-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNZ01000011.1 Listeria monocytogenes strain NRRL B-33383 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1092 36 100.0 30 .................................... TCGGTACATGCTTATTAACAGCCCCTACCA 1026 36 100.0 30 .................................... TCGTTCATATCCTGACACGCTCGGGCTTCT 960 36 100.0 30 .................................... TTTATAACCACCAGTTGCCTTCGTTTGTTC 894 36 100.0 30 .................................... TTTCATCCTTTTTCATGCTTTTGTAAAAGT 828 36 100.0 30 .................................... GTGTCACTGCACCAATGACCTCGTGTTCCG 762 36 100.0 30 .................................... TCGAATTTACGAGCATACTCCTTTGAGCTC 696 36 100.0 30 .................................... ATTTGAGCGACAGAGAATTGATATACGAGA 630 36 100.0 30 .................................... CAGATACCCTGTGTATATCCTGTATAATCA 564 36 100.0 30 .................................... TGAAAGTAATGAATTATTCAGAACCAAGAA 498 36 100.0 30 .................................... ATCCTTGACTTTATCCTTCGCTTTGAGAAT 432 36 100.0 30 .................................... TGTCGCCATTCCCGATTGGAGGTATTTCGT 366 36 100.0 30 .................................... TCCCGTAATGGTCTTAACTTACAATTTTGA 300 36 100.0 30 .................................... CGAAGTATAAAGGAATGGTCTACCCTTTAA 234 36 100.0 30 .................................... TGGAATGATTGATAAAGTAGCGAAATTTAT 168 36 100.0 30 .................................... TATCATAGTAGCATATAAGTTGTGCCCATT 102 36 100.0 30 .................................... AAACTAAAATAAATTTCGGCTTAAGTGTTT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3-566 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNZ01000010.1 Listeria monocytogenes strain NRRL B-33383 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 .................................... AAACTAAAATAAATTTCGGCTTAAGTGTTT 69 36 100.0 30 .................................... TGATTATTGTCCGCAATGTTTCGAGTGCGA 135 36 100.0 30 .................................... CTGTTTGGATTGGTGTTTTGTGTCGCAGTA 201 36 100.0 30 .................................... AGAAAAAGTGAAGAAAATAAAACATTTACA 267 36 100.0 30 .................................... CATTTTTAAAACCTCGCCCACGGAACAATA 333 36 100.0 30 .................................... AGTTTCTAGTCTGGAAGCCACACTGGAAGG 399 36 100.0 30 .................................... ATCGATTCGTTTATTATCCACAAAAGCATT 465 36 100.0 30 .................................... TGCACGTGTTAAGGGAGTCATGTTCACGCA 531 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTG # Right flank : AAGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCTTGCTCAACCACCCAAAAACAAACACAAACCACGGAAGCTATCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTGCCTTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //