Array 1 186295-185350 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHIV01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN068038 CFSAN068038_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 186294 29 96.6 34 .........................C... GTCATCTTTATAATGGTGTTGTTTTTCTGTCTGG 186231 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 186170 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 186109 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 186048 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 185987 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 185926 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 185865 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 185804 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 185743 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 185682 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 185621 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 185560 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 185499 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 185438 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 185377 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================== ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGTGATAAACCGGCCAGCGGGCCTGCGGCATCTCCGCCACTAA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 576-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHIV01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN068038 CFSAN068038_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 575 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 514 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 453 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 392 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 331 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 270 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 209 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 148 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 87 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GGCTGGCGGACGGTTGGTGGTTATTGCTAAGCAGTGTTCCCCGCGCCAGCGGGGATAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //