Array 1 2739327-2739474 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRT01000001.1 Pluralibacter gergoviae strain MGH173 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2739327 28 96.4 32 ..G......................... GTCAGGAAGAATCCAGCAAAAAAGCCGAGCTG 2739387 28 100.0 32 ............................ AACGGCGACGAGACGCAAACTCTCTCTCTGTC 2739447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGTTAGGCTCGCGCAGCGCGGCCTCCGGCGACGGAAAGGCGATAGAATGACGTGACAGCTGAACCAGACGCATGCTCTACAACTCCGGGCCTGATAATGAAAGAAAGCGTAGCCTAAACTCGCTGTCTGAACTGGTATTACGCCCGCGTCTGCTCAGCTATTTGGCGTGCTTACCATGCGAAAAATTTAGCGTGTTGTCTATCACAATTATGTGGCAACAGCGGCAGTTTTTTGCAGTGCGCGATTTCATCGCCCGGATGGAGGCGCCAGTGGCGGAATCATCTGCGTTTAGCGGGCACATGCAGGCAGGCGCCGGTCAGCCGGGAATTAAATTTGGCAGATTTTTTCTCAGGCGATGCGTTGAGCAGACCTTTTTTTTCCGCTGTTGCTAAGTTATTGATTTATTGATGCCTGATTTGTAACGATGAAAAAAGGTATTGGCGCAAAATTGAGGGTAATTCTTTTTTGAAACAGTGCGCTATAGCGATTACCCTCTA # Right flank : AATTTTCCCCCTGATGGCTTAACTCCACTGAAACTATTGGGGATATGAGTGAGACGTAGCGATCACAGTGAGAGGCGTCAATTTTCAGACTCTAACCTGTAGAAGGATAGTCTGTTTCAGTGTAGTTTGAGTTTGAGGACGCTTATACAATGCATTTGTTAGCCACTGAGAAAATGAGATGACGCTTCATGATTACACCGTTAAGTCTTGCGATGCTATATACATAGAAGATATACCTTGTATCCTCCATCCCAACATCGCATATCGCTATCTGGAATACACCGGGATGCAAAACAGAATTATCCAGGAGTGGGATTTTCCTTCCGGTTATAAGGCGTATGCCGATCAGTATCGCCATTTTCATATAAACCATCCATTTATGGCATATCGCTCTGCTCTTAATGATATTAAATCGGGAAAGATTATACTGCTGAAAAGCCTTCATGGTGGTAAGGAAATATTTAGTGTTCAAACACGATCTGGTAATTTGTGTACAGATC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2213735-2211510 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRT01000002.1 Pluralibacter gergoviae strain MGH173 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2213734 29 100.0 32 ............................. TATTTCCTTAATCCCGGCAACACCGCACTGGA 2213673 29 100.0 32 ............................. TATTTGATGAGGTTATGCACGCCATACTCATC 2213612 29 100.0 32 ............................. GACTTTCAGGTAAGACTAAATCCGAAGTGATT 2213551 29 100.0 32 ............................. TCCATGCTCACGCTCCAGTGCATCCTGTTTAT 2213490 29 100.0 32 ............................. GCGCTCATTGCTGGCCTGATACCATGCTATAA 2213429 29 100.0 32 ............................. CGATCTGGTTTCGATATTCATCCATGTAACAA 2213368 29 100.0 32 ............................. TGCTGGCAGACTCCGCCGCAAATCCTTCAGGA 2213307 29 100.0 32 ............................. TGGCCGCTGTAGCTCGTGAAGTCTGCCTGTCA 2213246 29 100.0 32 ............................. CAGTGCGGTATGGCTGCCGGTGCCGAAGACAA 2213185 29 100.0 32 ............................. ATTTGGCTACATCAGCAACGATATCGACTTTG 2213124 29 100.0 32 ............................. GTTGTAATTAAACCGTCTGGAGAGACTTATTA 2213063 29 100.0 32 ............................. AACTCTTCCAGGTCTTCATCGCCCAGGTCTTT 2213002 29 100.0 32 ............................. TGTTCGAGGATGGCCCGAACTCGGAAACGCGG 2212941 29 100.0 32 ............................. GGCAACGAGGTTGACGATGTGACGAAAGATGC 2212880 29 100.0 32 ............................. GGCCGACTTCAGTTCTTTGAGACCGGCAGACG 2212819 29 96.6 32 ...........................T. CGGAGCGGGTGCGGGAGGCGATAGAGACCCCC 2212758 29 100.0 32 ............................. CCTGACCTGCTGCCTCACCAGGTCGAGCTACT 2212697 29 100.0 32 ............................. TACCTACGCCTGCGCATACGTAAGGTAGGGAA 2212636 29 100.0 32 ............................. ACCAGGTGCCTAACCTGCCGAATGACCTCGGC 2212575 29 100.0 32 ............................. GAGTCCGGCATCAAAATGGTGGTTCACGATCA 2212514 29 100.0 32 ............................. AGACATCATCAGCGGGAGACCACTCCCACAGC 2212453 29 100.0 32 ............................. TACGTTGGATGCAATTTTTTCAAATGATATGG 2212392 29 100.0 32 ............................. CCCACCTGAACACCCTCGACATAAATGCCTTC 2212331 29 100.0 32 ............................. GAGGCCGCATGAAACTTACCCCTGCACAACAG 2212270 29 100.0 32 ............................. TAGCAACGGGGAACGGTGGTACGCCAGTGGTC 2212209 29 100.0 32 ............................. ATTTATGTTCCGGTTCATACGAACCAGATAAT 2212148 29 100.0 32 ............................. AAAACGTTGAGGACATATAATCATGGCATACG 2212087 29 100.0 32 ............................. GAGATATGTGAAAGTCTTGGAGGATCTGATAA 2212026 29 100.0 32 ............................. CAGTTGATATAAAACATCGTTATCAACCTTGT 2211965 29 100.0 32 ............................. CCTTTATCTTCCCTTCAACGGCTCTTACGAGA 2211904 29 100.0 32 ............................. AATGGGAACCCAGGCCAACCTCGTCAACCGAT 2211843 29 100.0 32 ............................. GCGAGCAGCTCTTCCCTCTGGCACCAGCTCTC 2211782 29 100.0 32 ............................. CAACAGGGTGCAAATAGCGTCCCACAGGTCGG 2211721 29 100.0 32 ............................. CGGCGGGCAAAGATGAATAACAGGTCGATAAA 2211660 29 100.0 32 ............................. AAACCGCGTTTATCTACCTCGACCCGATTACC 2211599 29 100.0 32 ............................. TTTGTCGCTCCCGCACCGGGGAAATCGCAGAC 2211538 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGTGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGACTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : ACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCTTCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGTCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2227889-2224383 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGRT01000002.1 Pluralibacter gergoviae strain MGH173 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2227888 29 100.0 32 ............................. CGTAAATTTGACCCATGCAACAACCCAGCAGA 2227827 29 100.0 32 ............................. GCACGTGAGATGGTATGAGGATGAATATAAAG 2227766 29 100.0 32 ............................. TGAGGAATATATGGCATCTTTAAGTCAGAGAT 2227705 29 100.0 32 ............................. CCACCACGACGGTGTTACCAGTCGTTTGACGA 2227644 29 100.0 32 ............................. AGGAGACGATTAGTCGCGGCCATAGATGCTTC 2227583 29 100.0 32 ............................. AAGGTAGGTCGCTCCGTTTCTGATGTGCAAAT 2227522 29 100.0 32 ............................. TGTGGAGAAAAACTACCTGAAACATCTGATTA 2227461 29 100.0 32 ............................. GTAACGCATCCGAGCCTTCAGGATTGTATAGC 2227400 29 100.0 32 ............................. CGCTCGACATGATTCAGCATAAAATTGGCCGC 2227339 29 100.0 32 ............................. CATATCGTATGCTGGCTATCGGTATTTATGCT 2227278 29 100.0 32 ............................. CGATATTTTTGCATACAGCCAGTATGAAGCTG 2227217 29 100.0 32 ............................. GATTTACACAATGTCACTTCTTTTCCGGAATC 2227156 29 100.0 32 ............................. CTGGACTTGTCCGCGTGGGTGAATGCGACAAC 2227095 29 100.0 32 ............................. TCATCAAAGTACATTGCGCCCGCGCTAAGCAT 2227034 29 100.0 32 ............................. GGCCGTGGTATCCTCTGCTACCGACTCCAGCC 2226973 29 100.0 32 ............................. AGCTGGGATTCGATCCGTGGTCCGCGCTGCAA 2226912 29 100.0 32 ............................. TCTATGATAGTAGGCCGAATTAAAAATAATTT 2226851 29 100.0 32 ............................. CTTCAACTACAGCGTAACTGGCCTGTCTGGGT 2226790 29 100.0 32 ............................. CGCTGAAAATGGCATCACGACAGACAGCATTC 2226729 29 100.0 32 ............................. TAATTTCCTCCTGCCGCGCCGCAATGCTCAAT 2226668 29 100.0 32 ............................. CTCTTTCAAATGCCTGCCGCTGAAAATAGTCC 2226607 29 100.0 32 ............................. CATTACCCCGAGCGCAATAATCAATAAATCAG 2226546 29 100.0 32 ............................. TCGCCTGGTTGGTTCCCCGCGTTAGCGATAGA 2226485 29 100.0 32 ............................. TCCGGCGCTTTCTCAAATGCATTTTTCGCGAT 2226424 29 100.0 32 ............................. CGAAAGGGGCGGTTGTATCCGCTCACGACCCA 2226363 29 100.0 32 ............................. ATGCGATCGAGGTATTGATAGTCGGGATTTGG 2226302 29 100.0 32 ............................. TAGAGAAACGCCGTTTTCCCACTGTTTTTTTT 2226241 29 100.0 32 ............................. TTTGCTGCCTTACCGCCTGCAGAACGTTTAGC 2226180 29 96.6 32 ............G................ CGAGGGGCGGACTTTAACCCGGCAGGATTTGC 2226119 29 100.0 32 ............................. CGTCAACAATGGCTCGGTATATACTCCAGTTT 2226058 29 100.0 32 ............................. CGCTCCTTTCCATGCTTTATTGCTATCGGCCC 2225997 29 100.0 32 ............................. CAAAACATCGAAATCTGATAATTCATTTAAAA 2225936 29 100.0 32 ............................. GTCGCTGGATTGCAGGTGGTAGGCGCGCGACA 2225875 29 100.0 32 ............................. CTGGCTGCCAAAGATGGCGATGCTGCTGGCAG 2225814 29 100.0 32 ............................. GTGATCGCGAATGTCGGTACTCGGCACCGCAT 2225753 29 100.0 32 ............................. GTTGGGGCAATTAGCCATAACAGCTTTATCGT 2225692 29 100.0 32 ............................. GCAGTTCGGTCAGTCAATATCAGGCGGAATAG 2225631 29 100.0 32 ............................. GTCATTGCTGGGAAACACACCCCGGAGAATGG 2225570 29 100.0 32 ............................. CCGGTAAGCCGTGACTCAGTCGATCGCATGCT 2225509 29 100.0 32 ............................. CGCTGGAGGTTATCAGCCTCGCGCAGCTGGAT 2225448 29 100.0 32 ............................. TTCAATGAACTGATCGCCTCGCTGGGGCAGTT 2225387 29 100.0 32 ............................. CGTCGGTGACGATTAACGCAGATCCGAAAAAC 2225326 29 100.0 32 ............................. TTTTAACTCACCTGAACCAGGTCAGCGGTTCT 2225265 29 100.0 32 ............................. CTGAGCGTGCGTCTCAGAAATGGGGAAAGCAG 2225204 29 100.0 32 ............................. AGTGCCCGTCTTGTCACTACATGAAACCCGCC 2225143 29 100.0 32 ............................. AGAGTGTCAGTTGTAGCGACTCGCAACTATGA 2225082 29 100.0 32 ............................. GTTGAAACGTATACCATTGACGTTGCGATGAA 2225021 29 100.0 32 ............................. ATCGACGGCGCTGGAATGGACCAGTCGATGCA 2224960 29 100.0 32 ............................. TTTCGCCAGCGCGGGCAGGATCTGGACGCATT 2224899 29 100.0 32 ............................. ACGCCACCCTTTCCTCAGTCGTGATAGCAGCC 2224838 29 100.0 32 ............................. AAAAAAGTTACCCGCTCTCTAATCTCCCCGGA 2224777 29 100.0 32 ............................. GTGCTGGCCAGACTGACGGTAATGAGCTTGCA 2224716 29 100.0 32 ............................. CGCGTAGCCCACTATCGCAACGGCCGCCCTGG 2224655 29 100.0 32 ............................. GGACTATTTACGCCAGGAAAATCGAGGGTGAT 2224594 29 100.0 32 ............................. AAAGACGCCATTTATGTATTTGCCACGCAGGA 2224533 29 100.0 32 ............................. AGCTGATGCAGGCGCTGAAAGCTGCGGCAGGG 2224472 29 100.0 32 ............................. TGCCGGAGAACCAGTTCGGATTCGCGACCAGC 2224411 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 58 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCCACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : ATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTGTGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTCATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGCTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //