Array 1 17877-18426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVU01000045.1 Tetragenococcus muriaticus PMC-11-5 WGS_Sequence045_077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 17877 36 100.0 38 .................................... GCTTCTGCTGTCACGTCCTGAATTACTGCGCCTAAAAT 17951 36 100.0 39 .................................... ACTATCTTGATCAGCGTTAAATACCTTGAATAATGTTAA 18026 36 100.0 37 .................................... ACTGCTACCGTAGTTAAAGCGGCATTTTTTATTTCTT 18099 36 100.0 38 .................................... TGCAGCAGCCATGTTAGCCACCCCAATAGATCTGTCAT 18173 36 100.0 37 .................................... AAAGGGAGAGATAAGCATGGGAATTGTACTATTAGAC 18246 36 100.0 36 .................................... TTTCCTAAGATCATGCTAACCCCTGAAATGATAGCC 18318 36 100.0 37 .................................... AAAAGTAAACTCCGTATCCTTGGTCTACTTCTGGAGT 18391 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.7 38 AATAGATCCTTAACCCCAATAGATGGGGACGAGAAC # Left flank : CTTATCTAAATCCAGAAGATTACGGAAATATCATGCAAGATCTACAACTTAATCTTAAAAAAGCAAACAAGGAATTGAATTTAGAACGTTACTTGAGCTTGCCAATTTACGCAGAAATTCTCCGTGTTGCAGAGCCTAAGAGTCATTTATTGAAATTAGTTGATAAGGTAAATGGCGTAAACTCTATAAGAAACCAAGTGGCTCATGGTTTTATACCAATTGATACAAAACAATTCAAAATAAGAGACTTATCTGAGACATGTTGGCAATTATTAAAAGAAACAATTGATGTTGATGAACAATGGAAGACATTTTTTGAAAATAAAAACCATGAATTTAAAAATATGGTTAGCTATTGATTATGTTTTTGTTAAATGTAATATATAAAATATTGGTTAGTTTTCAGGCATCAATTTTTGTTTCAAGTGAGTAACTGGCTAATATATGGACTGAAAAAAAGAGCGCTGAAAGCTGGTGTTAATGCTTTTAATACAATATCT # Right flank : TATATTCACGATCTGCTTTACCATTTAATAAAAAATAAGCTCTATTAAATGAGAATGAGGAGTAAAAAAAGGAGAGACTAATAATTGAATTTATTTGGATTTGAGATTGGAAAAAGAAAAAAGTAGAGAACAAAGACAAAAAGAATTGAACAAGAAATATATTAATTTCAACCGACACCCAAGATACGAACAACTGCATTACCAAACTGAATTGTTTCAATATGGTTGGCTTGTAAATGTGAGAGATGAAAAAGAACTCGGAAAGGCAATGTTAAATGACAAAGCTTGGTACTGTATTAGATATGCAGGGGTTTATAAGTCAGATACAAAGAACAAGCCTCGGAATTTAATACGGATTGGGGATTTAAATCGAGTTGAGATTTATAGTGAAGAGAACTAGGTTTATGGAAAAATGAAAGCGATATAAATTTGTTTTGAGATTGAAGAGTCGTTAATAAAAATTCTATATCCGGGAAAAGCTTAGTATGTAAGGAGTGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGATCCTTAACCCCAATAGATGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1872-2937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPVU01000293.1 Tetragenococcus muriaticus PMC-11-5 WGS_Sequence300_064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1872 28 100.0 33 ............................ TTACGTTTGTTTGTTTCGGGATAATAATTTTGA 1933 28 100.0 33 ............................ TAGTCTGCAACGTTGGTATTCAAGCCCTTTTTA 1994 28 100.0 33 ............................ ACTTTGAATAATTTCCATTAAGGTTGTTGTGTA 2055 28 100.0 33 ............................ TTTGCTTGGTCAATCCCGTAAGCGCCAAAGCTA 2116 28 100.0 33 ............................ TTGCATAACGTAAATCTCCCGACTTGCTATCAG 2177 28 100.0 33 ............................ TTTAAGTCTTTTCGCAAATCAGTGATATTGTCG 2238 28 100.0 33 ............................ TGCTCTACCTACAACTTCATCAAATATAGCGAG 2299 28 100.0 33 ............................ GTCCTTTTGCCATTGTGGGTTGGTATCATACTA 2360 28 100.0 33 ............................ TAAATCTTTAGGAATAACCACGAAAGCAGTTAA 2421 28 100.0 33 ............................ TTCCTATGCTTTCTGCAACACTTTGTTGAGTTG 2482 28 100.0 33 ............................ TTCTTCGTTTTCGTTTTCTAATTCAAGTTTTAA 2543 28 100.0 34 ............................ TTTCAATCACACCAAAACCGCGTGGCCTATACTG 2605 28 100.0 33 ............................ TAGACGACACAGGCGGAGATGGGAGTGACCTTA 2666 28 100.0 33 ............................ GAATATGAGCTTGTACCTGCTAAGGTTGAAGAA 2727 28 100.0 33 ............................ TTACTTAATGTCGATGAACCGAAAAAATTAATA 2788 28 100.0 33 ............................ TCCGATTAAATCCATATATAAATCGCTCCTTTA 2849 28 100.0 33 ............................ TTTATATACTTATCGTCGGCTTCATGTATCACG 2910 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 GGATCACCCCCGCTTATGCGGGAAAGAC # Left flank : GTTACGTACAACAAATTCTTTGGAACGCTTAAATCGGGAAATCCGACGTCGGGAAAAAGTCGTTTCGATCTTTCCCAACGTCGTTTCCGCTGAACGTTTGATTGGCGCCGTTTTAATGGATATACAAGAAGAATGGCAACAAATGCCCAAACCTTTTTTCCAAGGTCCTGTCTTAGAAGAAGAGTTCCCTTTCTCTACGGATTGATCTTTAAAGAAAACGAAGAACGATTTGACAATGAATGAAGGCATGGTATTCGCGGTAAGCGAAATGGGCGCCTGTTCTTAGGTTGAAGAACCGAAGAAGCCGCCCAAGATCACCATGCCTGAATAGATTCGTTGTCAAACCCGTCGGCTACCTGATCTTATTCGTCGTTTCTAGAAAAATTTAAACCATAAATAAAAAGAATCCTTATCAAATGATTAGAAAATCGTTCAACAGACAAAGCGTAAATGACATTGATATTTTTACACAAGATTTTGGGCTTGACCGCGAAAGACTA # Right flank : CAGTTAAAGATCCCTACAAAAACAGCATTTTTAATTCACCATTTTCAAAAATTTATTCACTTTTGTCGATAATTGATATATTATTTTCGCATCTTCCAGAGCTCGGTGAGGTACATAATCATCAAATCCATAACTTACTAAAGCTGTTTTTAATTTATAATCACTGAGAAGCATTTTTTCTCGTTTAATATACCGAATTAAATCATGAGGCTTATTTGATAACTTTATTAAGTCATGATCCTTTAAATATTTATTCAAAAAGCGAAGATCAAAGTCAAGTCCGTAACCAACTATAGGAAAATCTTCTATAAAGTCTACAAACTCCATTAATGAATCCTTTAAAGGTTGACCATTTTCATCTAATAAATCTTGAGTGATACCAGTTAACTTAATAATATCTGTTGGTAATTCCTTATCGTATTTAATTAATCGATGAAAATTTGTTAGTTTTCCTCCATCCAGCTTAACTGCTCCGATTTCAATAATTTGATTATCGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCTTATGCGGGAAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //