Array 1 13517-13036 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALNC01000031.1 Streptococcus suis YS66 Contig00033, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     13516	    32	 100.0	    34	................................	TTGACTTCTTCAAGAACTTTTTATACAATACTTG 	
     13450	    32	 100.0	    35	................................	ACTGTACAACCTGCCCTTGATGTCAATAGGTTCTT	
     13383	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA 	
     13317	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC  	
     13252	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC 	
     13186	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG            	Deletion [13132]
     13131	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG   	
     13067	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                  	
==========	======	======	======	================================	===================================	==================
         8	    32	  93.0	    32	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCATTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTGCAGATAACAGGCGTAACGACCTCTCATGCCACGGCTGAGCACGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT

# Questionable array : NO	 Score: 8.98
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [7,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,10.05   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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