Array 1 36871-34822 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQJ01000006.1 Riemerella anatipestifer strain RCAD0421 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36870 47 100.0 30 ............................................... CTAAAGTAGTGAGTTAATAATATGTTGATT 36793 47 100.0 30 ............................................... CTATCTTTGCCATTATGAATAAGCCGCTGC 36716 47 100.0 30 ............................................... CAGCGATAACGGCATCGTGGCGTGGTTTAG 36639 47 100.0 30 ............................................... ACACAACAAGTTGCGAACCATCACAAAGAT 36562 47 100.0 30 ............................................... AAGCGAGAGGCGATGATGATAGTTGGTATG 36485 47 100.0 30 ............................................... TATCCTAAACTCTTCCTCAATTTTAGCTTT 36408 47 100.0 30 ............................................... ACCTCACAGGTAACACTGGCGTGAATGTTA 36331 47 100.0 30 ............................................... TGATACAGCAAATAGTAGATGTAGCACAAG 36254 47 100.0 30 ............................................... AGGGGAGAGACGATGCAGATCACCGGAGCC 36177 47 100.0 30 ............................................... TGGCGCAGCGCAGTGCCGATGCAGCCAAGC 36100 47 100.0 30 ............................................... GACCTGCGCGTACCGCTGCTCGTCATCGGC 36023 47 100.0 30 ............................................... GGCCGCAAAGACCTTGATGGCGCTGGACAA 35946 47 100.0 30 ............................................... TGTCTGGAGAAGAAGCATTGCTTTATGAAG 35869 47 100.0 30 ............................................... TAGATGTTCTGATGGTGTTTTCTACCGTTT 35792 47 100.0 30 ............................................... AATCGGGCTTTGCCCCAGTAGCACAGGCGC 35715 47 100.0 30 ............................................... TGTCGTTCGGGTTTTACGACTAAGACTTTG 35638 47 100.0 30 ............................................... AACCTCGTTAGGGTTAAGTTATGTTAATCA 35561 47 100.0 30 ............................................... GTCCAGGCTATGGTTCTCCAGATAAAACAG 35484 47 100.0 30 ............................................... TGTTTTAAAAAGTCATTAAAAAAAAGGCTT 35407 47 100.0 30 ............................................... AACCAAGCTACTTTTTTGCCTGAATATTGG 35330 47 100.0 30 ............................................... CTTTGGGTACGGTAAGTTCTATGCTTCAAA 35253 47 100.0 30 ............................................... AAGCAGATAACGGAAGATTTCAACGAGGGT 35176 47 100.0 30 ............................................... TAGAGCAGGTTTTCATTTGTATTACTATCT 35099 47 100.0 30 ............................................... TAACCCACTCCTCTTCGTATTCTTCATTCT 35022 47 100.0 30 ............................................... TATTTTGTTCTTGCACACATAAAATTTCTG 34945 47 100.0 30 ............................................... ACTACGGAGCTAACTAAATATAAACAGCTC 34868 47 91.5 0 .........T..............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.7 30 GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 10735-13028 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXQJ01000009.1 Riemerella anatipestifer strain RCAD0421 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 10735 36 94.4 30 ...........T.....G.................. CCGAAAAGGGTAAGGCTATGCTATCAGAAA 10801 36 94.4 30 ...........T.....G.................. CATTCTGTAAACATCTTCAACAAAGATAGC 10867 36 94.4 31 ...........T.....G.................. CTAGGCGAGAATGTTTATAAGGAACAAGGTA 10934 35 86.1 79 ................-.....T.T...T...G... TCCGCTGAAACTACAACAAAGCGTGAGCTAACATGAGAGCAGTCCCAACAATTAATCGCTGGATGTTAGGGGTAGCGGA C,A [10956,10966] 11050 35 83.3 81 .......G........-.....TT....T...G... TCCGCTGAAAATACAACAAAGCTCGTGAGCTAAAATGAGAGCAGTCCCAACCGAAAATGCGGTATTAAAAGAAGTACAACA C,A [11075,11082] 11168 35 86.1 81 ................-.....CT....T...G... TCTGCTGAAAACAACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACTTAAAATGATAGAGGTTATCTACGGCACTA T,A [11193,11200] 11286 35 83.3 80 .....T..........-.....TT....T...G... ACTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAAT 11403 35 83.3 80 ................-.....T.T...T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA C [11425] 11519 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCCTCAAACTTCAACTTGTTGCTGGTAACTC C,A [11544,11551] 11636 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATACAACAAAGCTGTGAGCTAAAATGAGAGCAATCCCAACGCATTATCGTACTCTGTAACACGAACGGCA C,A [11661,11668] 11753 35 86.1 80 ................-.....TT....T...G... TCCGCTGAAAATATAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGATTGTCGTTTTAAGTGTGATACCCACAAG C,A [11778,11785] 11870 36 100.0 30 .................................... ACCCGGCTCTTCCAAACCCATTTCTGCAAG 11936 36 100.0 30 .................................... CACTAGTCTATTTACCTCTATACAAGTGGG 12002 36 100.0 30 .................................... GCTTCCATAGGAATTTCCTGAGTTACCACT 12068 36 100.0 30 .................................... CAAAGATGATATGTTAAAAATGAATATTCA 12134 36 100.0 30 .................................... GAAGTAAGGGTAGCTGATGAGAGCCATATC 12200 36 100.0 30 .................................... CTTTTTAGATGAAAACCGCTAGAACTTTGT 12266 36 100.0 30 .................................... ATAACGGTCATTGTGATGGTGGAGCTGAAT 12332 36 100.0 31 .................................... CCCATAAACTCGGCAAGATTTGGAATGATGA 12399 36 100.0 30 .................................... AATTTTCTGGAAGTTCAAAGTATAAGGCTT 12465 36 100.0 30 .................................... TTAGGCGTAAACATATACAACGAAGCTAAT 12531 36 100.0 30 .................................... TTAATGCTTTGCCGTCATCTTTGTAAGTTA 12597 36 100.0 30 .................................... TTGTTCTTCTAGGTCTAATATCTTTTGCTG 12663 36 100.0 30 .................................... TGAAACTAAATGTAAGTATGTTGGTTGAGA 12729 36 100.0 30 .................................... GTGAGGTTTGATTTAGATAATATTCATAGT 12795 36 100.0 30 .................................... AAAATCAAATAATTCATACTGCTGTTTGGA 12861 36 100.0 30 .................................... CTTTCAGAGATGGGACAATGGTTTGTGGAA 12927 36 100.0 30 .................................... TGCTGAAATAGAAAGATTAGGTGTTAATGT 12993 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================= ================== 29 36 95.3 44 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : AAGGCACTTATATTAAAATAGACGGCAATGACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGCACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTACATTAAGGAAGGGCAGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGCCTCTTCTCTCGGTAAGACGAAGTCGGTTCCCTCGTACGAGGGAACCGACTTCGTCTGTATTAAGGAAGTGAGGAATTTTCTGTAATAGAATAAATAATATAGCAAAAATCCCTGCTCTGCAGGGATTTTTTTTATGCCCTTAGGT # Right flank : CTGGTACTCCAGTTAGTTTTTCAGCTTCTGCGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTTGCTCAACTCCTGATGCAGCTCCTTCATTCTGGTAGCCACCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATAAACGATACTACGGTACTCAAAAAACTTATCAGCAATTTCCTTAGACAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGCTAATATAATGAATTTTATGCTTTTGCCCTTTGGAAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.94, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [39-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //