Array 1 397518-397339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWTK01000002.1 Methanohalophilus portucalensis FDF-1 ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 397517 37 100.0 32 ..................................... ATGAGTATCAACAGATATTTGTTAATAACAAT 397448 37 100.0 36 ..................................... TTAATCTGTTCTTGCTTCCCCTCGATCTCCTGACGC 397375 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 34 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ACTAAAACAAGGATTGAAACTTAATTGCTTCAGAACCTTCAGCAATTACATGGAGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACTTTGTGTTCTTCCCATGTGTGCATCTCTCCGTCTCGTCAAAATTCAATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAAGGATTGAAACTTTATCAAGTTACAAATCATATAAGGATGAAGTCCGACAAG # Right flank : GTCTAAGCATGGTCTTAAGCATGGTCTAAGGTTAGTTTAAGCATGGTGTCAAAATTCAATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACTAAAACAAGGATTGAGACTATAATATGAAATAGTAAATTATACAATATAGGAGAATACCATGACCAATGCTAATGAAATTATAAAATATCTTGATATGAGCAAGCACCCTGAAGGTGGGTATTTTAAAGAAACTTACAGATCCGGGGAAACGATCAAGCACAAATACCTACCAAACAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 398921-397927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWTK01000002.1 Methanohalophilus portucalensis FDF-1 ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 398920 37 100.0 35 ..................................... TTAAACGGTGACTGTCCAAGAAAATCCACGTTCAA 398848 37 100.0 35 ..................................... ATCATGTAATGTCTGGTAGAAAATTAGGACATAAG 398776 37 100.0 36 ..................................... AATATATCGGCAGTATGTGAGCAGGCAATTCTAAAA 398703 37 100.0 37 ..................................... CCTGTCGTTTAAGCGGATCGCACATGAGGAGCTCGAA 398629 37 100.0 40 ..................................... TTCGGGTAGGCAAGAACGAACTGTATTATCTTGCTCTTGA 398552 37 100.0 35 ..................................... TGTGTTCATGACTGTCGTTGATGCTGACGGTTCTG 398480 37 100.0 45 ..................................... TCCGAATTCTCCAGGCTAACTCTTGCATGTAATATACAACGACAA 398398 37 100.0 36 ..................................... CTTATTATGGTATGTCTCCAATACCTGTTGTATCTT 398325 37 100.0 34 ..................................... TTCAGACTCTCAATACATCAGGTGGTGGCTCAGT 398254 37 97.3 35 .............G....................... ATCAATATTCAGGCACAATGGAAGAGCGTATTAAT 398182 37 100.0 37 ..................................... TCTTGCTTTCTACATCTTGTCTGGAATGGGTGTGTTG 398108 37 100.0 37 ..................................... CAGAATGCCACATCATTTCTGATACGAGGCACAAGTG 398034 37 100.0 34 ..................................... TTAATTGCTTCAGAACCTTCAGCAATTACATGGA 397963 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 14 37 99.8 37 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ACTAGTTTGCGTTGCCATGGAAGGGTTGTAACTCATCTAGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACTCTTCAATAGTTAAATAATATGGTTCACCATCAACATGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACCATATGCATCTACACCCTTTTGTTGAGGGTATAACGGGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACCTCTCTCCAATTGTTTTGAACGTCTTGCTTCAGTCAAAATTCAATATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACAAGGATTGAAACATAAGGTCCTCCATATCTTCTGATATATCCACATCAT # Right flank : TTTGTGTTCTTCCCATGTGTGCATCTCTCCGTCTCGTCAAAATTCAATATCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAAGGATTGAAACTTTATCAAGTTACAAATCATATAAGGATGAAGTCCGACAAGGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACATGAGTATCAACAGATATTTGTTAATAACAATGTCAAAATTCAATATCCACTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 3 401085-399197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWTK01000002.1 Methanohalophilus portucalensis FDF-1 ctg0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 401084 37 100.0 38 ..................................... AAGAGGATCCTGATTTACTGGAAGAAGAAGTGGCTCCA 401009 37 100.0 36 ..................................... GTTTGACATATACACTCAGGAATTTCGGATACAGGC 400936 37 100.0 37 ..................................... TCCATTACATAATCTGCAAGGGTTTTTGGTTTCAATC 400862 37 100.0 36 ..................................... AACATGGAATTATACTATTAAAACATGGAATTAAGC 400789 37 100.0 36 ..................................... CCAGAGCACCGAGATAACTGACGGTACTGGAATGAT 400716 37 100.0 36 ..................................... TGATCCAGTGGTATGCATCAATCGGATTGAATGACA 400643 37 100.0 38 ..................................... TGTCTGCAACATATATATACCTTGTTCCTATTACCAAT 400568 37 100.0 38 ..................................... TCAGGGGCTTTGAAGTTGAAAATAGATTTTGCATCTAT 400493 37 100.0 37 ..................................... CTGTCCGTAGCGGCCGGTGCGGCGGCTGTAGGATATG 400419 37 100.0 36 ..................................... TGTTCCTCTGGGCTGGTGGCTTCTGTCATAACCTTT 400346 37 100.0 36 ..................................... TTTCATCAGATGCTGTGTAGAACTTCCACGATTCAT 400273 37 100.0 35 ..................................... CAACATCGTTGGATCGCATGAAAACAGTTAAATCC 400201 37 100.0 36 ..................................... CATCTATACAGATTACAAACAGCCTTACAGGATTTC 400128 37 100.0 35 ..................................... TAGAATTCCTTTGCTTCATTGACAAACTGGCGAAA 400056 37 100.0 38 ..................................... CTATTTATTTTGTTATGGCTGTCACGCAATGCGGCAAA 399981 37 100.0 35 ..................................... TCCTCTTTGTACTTGTAGTTCAAGGATTCTTTCTT 399909 37 100.0 46 ..................................... TGCATAGTCGAAGCAATATGGATATACTTGCTCAACAAGCAACTCA 399826 37 100.0 38 ..................................... CAATCTTTTGTTTCCTTCGCCGAGGGAGCAAGGGACGC 399751 37 100.0 35 ..................................... ACGATTTTGTAGCCGTATATGACGGATGCGGGTTC 399679 37 100.0 38 ..................................... GATACACAGAAGAAGGCCTCCGATGTTGCCACAGCTGT 399604 37 100.0 37 ..................................... CTATCTTATAATACTTGGTTTGCCGTTCTTTATGTTG 399530 37 100.0 38 ..................................... TTATAGTGTCGGTGCTATAAGCTTAAAGTTATAAAATT 399455 37 100.0 37 ..................................... TAGTTTGCGTTGCCATGGAAGGGTTGTAACTCATCTA 399381 37 100.0 37 ..................................... TCTTCAATAGTTAAATAATATGGTTCACCATCAACAT 399307 37 100.0 37 ..................................... CATATGCATCTACACCCTTTTGTTGAGGGTATAACGG 399233 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 26 37 100.0 37 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATCTAAAGAAAGAAATGTTTTTGTTGCTTCAAAAGAGAATCACATTAAAGGAATTGTTGATGAAGTACTGTTTCTCGAAGATGGAACAGCTGCGCCTCTTGAATATAAGTTTGCAGAATATAAAGACAAAGTTTATATGACTTATAAATACCAGCTTTATTTGCAGGCATTGATGATCTCCGAGAATTATGATGTAGAAGTCAATAGAGCTTATATTTGTTATACACGAAGTAATAATATGGTCAAGTCTATTAAAATTGAACCGGAGGATGTGGATGAAGCCATAAAGATTGCCAAAAAGACAATTGATATAATAGAAAAGGGAGTATATCCAAAGGCAACAAAGTATAAATCCAAATGTATTGATTGTTGTTATAGAAATATTTGTGTATAATTCTTGTATTTATAAGGGATCTGATAGAAATGGTTCAAGAATTGAGATGCTTGAAAAGGAGGGATATTAGGGCTTCTTTTGGACAAAAAAGGGTGAAAGTTGTGCT # Right flank : CTCTCTCCAATTGTTTTGAACGTCTTGCTTCAGTCAAAATTCAATATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAACAAGGATTGAAACATAAGGTCCTCCATATCTTCTGATATATCCACATCATGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACTTAAACGGTGACTGTCCAAGAAAATCCACGTTCAAGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACATCATGTAATGTCTGGTAGAAAATTAGGACATAAGGTCAAAATTCAATATCCACTAAAACAAGGATTGAAACAATATATCGGCAGTATGTGAGCAGGCAATTCTAAAAGTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //