Array 1 1644738-1644888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014912.1 Secundilactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1644738 29 100.0 32 ............................. ACCACGGGCAATGCGGGCAACGAATACGGTAG 1644799 29 100.0 32 ............................. GGTGAGCGTCGTGGAAAAATTCAAATCAAAGA 1644860 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCCCCACGCATGTGGGGGTGATCCC # Left flank : TTTTCTGGTGACTCATCTGGTTCAATTTTACCGCCTGGGAATTCCCAGAGCGAACCCAGGGCTCGATTTGCGGCACGTTGGGCAGCTAACAGCTTGTTGCTTTTTAAGATTATGGCACCAACTACTTGGATTTTTTTCATGAGGTATTGGTCCTTTCACGTAGTTTCTTAGTGTTAAGATTATCATAAAATAAAGGACACGTGTGCACTGATTTATAACGCAGGCGGGGTTTAAAGACATGGTGTGTTCTTGGATAATAAAATCCAGAAGAAAAAATCTTTGCCAATTTTTATATTGGCAGAGAACTCAGTCTGAGATAAAAAAATATGAATAGGTCAATTAAATCTTTGTGGAGAAAGTAGCGTGTTACAATAAATAAGATCTATTTGACACTGCTTTTAGGTGGGCTGTTAAATTGAGACTAGTTTATTCAATTGCAAGTCATAAAAAAAACGGGTTTTCCATTTTTAGAAATGTTGGTATGGCGGCCTTTGTTTAGT # Right flank : TAAAGCAAAGTACGCTGTCTTAACTCGTAAGATTTATTCCCCACGGATGTGGGTGACTTTGACAATTTGTCAGACACTGTTGATTCAATGGTGTATTCCCAACACATGTGTGAGGCTAGGAAAACTCTATTAAAATTTCTACTGATAAGTTCTCTCTATGTGATTTGGGTGTTTGCAGGCAGTAAAAGGTAGGTATATGTTGCTCACGTAACAGGAGATAAAAAATTGATATGAGAAAGCTTTTATTACTAACTTTTTGAAAACATATTGCTAATATTTTAATAAACAAGACTCTTGAATAGCCAAGGAGCAGCGAAGAAAGGTTCTTATTTATTGGAGCTAATTGCCGCAACATTACATAAAAAAGATAATGAAATAAAAGTTACCAACTGATAGTTATAAATTGCGGGTCTATTGCAAGCGCAGTTCTTTTAAAGTGGTATACTATTTGCAATAGTAGCCATTGAACCGAGTATTTTTAATAAACATGTTCAAATTGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1653176-1653572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014912.1 Secundilactobacillus paracollinoides strain TMW 1.1979 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1653176 29 100.0 32 ............................. TCACGGGCCCTTGAAAGTGCGCAAACCCTCCG 1653237 29 100.0 32 ............................. ATGACCACAGGACCCAGTTGTCATTATCGGCT 1653298 29 96.6 32 ............................C TTGAACGTCAAGTCTTTCCACGCGTCCATGTC G [1653320] 1653360 29 100.0 32 ............................. AAGTCGAATTCCCCACGAAAAGACTCAATTGT 1653421 29 93.1 32 ....................T.......C TTGCCGTTTGACCGTTCAGCCTCGTCACCGGT 1653482 29 100.0 32 ............................. CACTATCTCTTTCAGCAGTTCTCATCGGCTTG 1653543 29 86.2 0 A...................T...T...A | G [1653565] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : CGTATGATCAATTTTTGAACGGTATTAACGATGGCGAGTTGATGCGTTTTCGGCTAACTGCCAATCCGGTTCATGCGGTACCGCAACCAGGTAAAAATCAGCCTAAAATATATCCGCATATTAAGGTTGACCAACAAAAGGGATGGCTGATTAAGCGTGCCGATAAGTTAGGTTTTGAACTGATTAAGAAACAGCAAAGTGAAACCATTGAAGATGTGAATGATTTGGCCTTTGATATCGTTAGTCGCGATTGGCCAAGGCTTGCTCGCAAACAGAGCAGAGGTGCTAAGTTGAGTCGTGTGAGTTTTGAAGGTATGCTGCGGGTGACTGACGCTGTTACTTTTCGGCAAACGCTGGTAAATGGGATTGGGAAAGAAAAAGCATTTGGTATGGGGCTGATGACGGTGATTCCTGTTTGATTTTAGTGATGGTGAGTTGCAAGTTATAAAAAAACGGGTTTTCCACTTTTAGGAATGTTGATATGGCGGGATTTGTTTAGT # Right flank : ATAAAGGACCTTGCAGACATTAAATATAATTTTCCTCCCTAAGGTGAATGAGAAGAAAACAGGATTGTGTTGATTTTCTAATTATCAGATGCATATATTAAGTGTTTTTCTATCCGTATATTCTTGATTATGTTTAAGGTTAACGGATTTAGCTTTTATTGAAGTTGGGCAGAACCAAATCACACTCAATATGACGCCCAACCATTTATGGCAAACCATTCAAACCCAATTCCGTTATCATTGACTAGAGAACAGAAATTTGCGTTATTATTGATAGTTGTATTTCTAATTATGTCGGCAGGATTGGACATAGATATGTTTGATTTCAAGGCTGACCAAGCATTTCGATATGGTCTTATTCGGCGGCCTCAAACACAGCTAACCGAGTTACAAGAAGCTTTTATAAAGGGAATTGGGCGGATTCAATAGGCAAATATAGGGGGAGATTATGACTAATCCAGTTACTGGCAATATTCAAATTAGAAATGAACACCCAAAGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //