Array 1 2290427-2288651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085981.1 Salmonella enterica strain SZL 30 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2290426 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 2290365 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 2290304 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 2290243 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 2290181 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 2290120 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 2290059 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 2289998 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 2289937 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 2289876 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 2289815 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 2289754 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 2289693 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 2289632 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 2289571 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2289510 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2289449 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2289388 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2289327 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2289269 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2289208 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2289147 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2289086 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2289025 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2288964 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2288903 29 100.0 11 ............................. CGGCCAGCCAT Deletion [2288864] 2288863 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 2288802 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2288741 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2288680 29 93.1 0 A...........T................ | A [2288653] ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2308203-2306709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085981.1 Salmonella enterica strain SZL 30 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2308202 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 2308140 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 2308079 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 2308018 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 2307957 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 2307896 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 2307835 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 2307774 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 2307713 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 2307652 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 2307591 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 2307530 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 2307469 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 2307408 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 2307347 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 2307286 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 2307224 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 2307163 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 2307102 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 2307041 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 2306980 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 2306919 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 2306858 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 2306797 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 2306736 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //