Array 1 579-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNC01000019.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51264 N51264_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 578 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 517 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 456 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 395 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 334 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 273 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 212 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 151 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 90 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19118-17260 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNC01000019.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51264 N51264_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19117 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 19056 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 18995 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 18934 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 18873 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 18812 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 18751 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 18690 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 18629 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 18568 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 18507 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18446 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18385 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 18324 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 18263 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 18202 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 18141 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 18080 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18019 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17958 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17897 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17836 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 17775 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17714 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17653 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17592 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17531 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17470 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17409 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17348 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17287 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163616-162550 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNC01000005.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51264 N51264_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163615 27 93.1 32 --........................... GCTGAGATAATTGCCGATCATCTTGAAGACAT 163556 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 163495 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 163434 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 163373 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 163312 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 163251 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 163189 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 163127 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 163066 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163005 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162944 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 162883 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 162822 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 162761 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 162700 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 162639 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 162578 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //