Array 1 428913-430221 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRL01000002.1 Salmonella enterica strain GSJ/2017-Sal.-010 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428913 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 428974 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429035 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429096 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429157 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429218 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 429279 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429340 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429401 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429462 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429523 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429584 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429645 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 429706 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 429767 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 429828 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 429889 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 429950 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430011 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430072 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430133 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430194 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446392-448132 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRL01000002.1 Salmonella enterica strain GSJ/2017-Sal.-010 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446392 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446453 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446514 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446575 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446636 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446697 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 446758 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 446819 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 446880 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 446941 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447002 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447063 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447125 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447187 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447248 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447309 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447370 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447431 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447492 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447553 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 447614 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447675 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447737 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447798 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 447859 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 447920 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 447981 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448042 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448103 29 93.1 0 A..............A............. | A [448129] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //