Array 1 94139-93404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJE01000020.1 Porphyromonas gulae strain OH3161B contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94138 36 100.0 30 .................................... TAATTGTTGATCCTCTTGAATCTGCAGCCA 94072 36 100.0 30 .................................... TTGACGAAAATTATTGACCGGATAAAAAAG 94006 36 100.0 30 .................................... CCTTGAAACGAAGTGCGGATTACGAAAAGG 93940 36 100.0 30 .................................... AACAGGGCCGCCTGCCCCTGGGCTTGCAGC 93874 36 100.0 29 .................................... TCCTTGAACCAAAGAATAGACTCCTCGGC 93809 36 100.0 30 .................................... TCGGAATATCCCCTTGGATTCTGCTGATCG 93743 36 100.0 30 .................................... TCTCATAATGACCTTATATATTCAGTTATA 93677 36 100.0 4 .................................... GTGT Deletion [93638] 93637 36 80.6 30 CCC.CCGT............................ CTTGAGTTTCTGCATCTTTTCTTCCCTTGT 93571 36 100.0 30 .................................... CTTGAGTTTCTGCATCTTTTCTTCCCTTGT 93505 36 100.0 30 .................................... AAGGTTTTGTTTCTTAGCCTCTTTTCTTAT 93439 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 28 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : CGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCTTGTCCGAACTGACGGACGAATTTTATAAGAATGGCAACGGTGTTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGGATAGCTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCCGTATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGGGCGAACTTTGAACTTTTGAGTGCGAACCGGCAGGAACGTAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCACCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGTAG # Right flank : ATGATTCTTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGTGTGGGGATTCTTCCGCGTTGGGGCTTTTTCGCTACATTTGCAGGCGGACGAGGTACTCCCCTCTTCGGTGAATTTGTGCCGGGAGTGCTTTCCCTTTTTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATTCCTCTCTTCCCAGCATTCGTATTCGGCCGGTTTCGTTCGGCCTATGTGTGGTTATATACCGGCATTGCGTATGGCTGATGCAAACCTGCTGTATGAGCGGTAGAGCCTGAGAGCCGTTTCGTACCCCCTCGAAAAAGATGAGGCACCCACCGAGTTCCTGCACGAACTCGGTGGGTGCCTCTTTATTTATACCTCCGCTAAAGGCTTTTCGAGGTGTCCGATTTATATCAATCGGGCTTACAATCTATATATTTTTCGCAATCTATTTATATATAAATCAAAAACGATTTATATACAAAATGAAAAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 180717-182000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJE01000003.1 Porphyromonas gulae strain OH3161B contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 180717 37 100.0 34 ..................................... CTAATTTTTTGTTCATATTATTTTTTTGTTTTAA 180788 37 100.0 36 ..................................... TTTTCGCTTATAGGTAATAACCTTTATTTCGTTAGT 180861 37 100.0 39 ..................................... TCATCCGAGATTCTATTTGAAATATCAACGGAATCCCAC 180937 37 100.0 36 ..................................... TACTATGAACCATTTCTGAATCAGATCCTTTAATTT 181010 37 100.0 37 ..................................... TGTTTTTTGGTGTCTCTAAATTTACCTTTGACCTCAG 181084 37 100.0 36 ..................................... TAATGTGATAATTTTAATTTCTTCTGACATATTTAT 181157 37 100.0 36 ..................................... ATGAGCGTGGTAGTCAACAATCTTTGTCCCTTGAGA 181230 37 100.0 36 ..................................... TGCCATTTAAACTCTTCCTCCAATCTTTCACTTAAC 181303 37 100.0 36 ..................................... GGTTTCAGTCCCCCTCTTTTGATCATTACCGCATTT 181376 37 100.0 36 ..................................... GAAGTTTAATGCTTCCATTCATATATCCAAGATAGG 181449 37 100.0 37 ..................................... TACAATCATAACCTGCATCTGCCATTAATTTTCTCAT 181523 37 100.0 35 ..................................... ACAACCTGTTTGATGAACTTCTCTTACCCAGTCAT 181595 37 100.0 36 ..................................... ACCATTCCACTTTCTGAAACTTGACCAGAATGTGCA 181668 37 100.0 37 ..................................... CTAATCTCCCGCTATTGCTCCACCGATTTTCTGCAAT 181742 37 100.0 36 ..................................... CCTTAAGCGGACAGTTTTGACCTGCCCAGGCTTCTC 181815 37 100.0 38 ..................................... CTTTTATTAATTTTCTACACAACTATCCTGCATAACCG 181890 37 100.0 37 ..................................... TTTACAAATTGCACGGCTTCTACGCCATATTTTTCTA 181964 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.8 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCAGCATTGTTATACCGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACAACTCTTTTCTCCCGTTTTTCGAAAATAGGAGAAAACGGGAATTGGGACTTTTATTTTCGAAAAACAGGGGTGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGCTCCCACTTTCTGATTTTCGAAAATGGAAAATCAGCTAATCTGATTGTATATCAATGAGATATAAGCATCTCAATGGCAAAAATGATGTTATAGCTGCATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAGTGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TTCTTTATGCTCTACTCATCATCACTTGGACTTTCCAAGTTAGATTTTGGAGCGGTTAATATTGTGTTTTGCACAAGATAAGAGCATAATCACAGCCTTCCGCTTGTGTGCGAGCCAAGGCCGTTTGCGCACCATAATTTTCTATTTCGATGCTCCGAAAAACGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTGCGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGTTCTAAGCTCTTACCCTTCTACAACATCTCGGATACGACCCAAAATATCCTGCTTGATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 130463-125489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJE01000038.1 Porphyromonas gulae strain OH3161B contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 130462 30 100.0 36 .............................. TCGACCCCGAGGAGAGAGCAAGATACCTGCTTGAAT 130396 30 100.0 37 .............................. CCGAATCAATCCAAAAAAATACCGACGCCATCATCGT 130329 30 100.0 37 .............................. ATCCAGCTTCAAAAGAGTCCAAACCAAGCATGACTGG 130262 30 100.0 39 .............................. CTCTACGCTAAACATTAACTTTATCTCAATACTCTCTCC 130193 30 100.0 37 .............................. TATAGGCATTGCGGAGCATTTTATCCGCATTGATTTT 130126 30 100.0 36 .............................. TCCGCGAACTCCGCCGATTCGCCGATCGTAAACGAC 130060 30 100.0 34 .............................. AGCCTTGTCCATATTGATTCGTTTTAGTCATTAG 129996 30 100.0 34 .............................. TGAAGAGGACACATCGTCCTTTTAACTCATCGGG 129932 30 100.0 36 .............................. GTTTGCCAGATGCAACAAGAATGTTCAGCGTTATCG 129866 30 100.0 37 .............................. ATACCCTGCATTTTGGGCCGGGCGAATCCGTTTTGCT 129799 30 100.0 35 .............................. AAGAAAATGACAACTGCAGAAAAATTTAGAGAGCT 129734 30 100.0 37 .............................. ATCGCTTTCAAAAGCGAGAGCCTTCCACACCATCACG 129667 30 100.0 36 .............................. TGTGTTATATACGAGGTTTGGATTTTGATTATCTGC 129601 30 100.0 35 .............................. AAACAGTCTACGTGGACAAGGTGAAGACGGAGTAC 129536 30 100.0 36 .............................. GAACAATGGCTTTTCTACCCTCCGCGGATAATAGGT 129470 30 100.0 38 .............................. GACCGCTGCCTCCGTTATTTCATCAATTTGTTTCCATT 129402 30 100.0 36 .............................. CAGATTTGGTTAGACATATAAGAGCCGGGAACTCAA 129336 30 100.0 36 .............................. CTCTTTGAGGGCAATTATATCCCCGTTCCCTATCTC 129270 30 100.0 36 .............................. TGGATCCGTAATTGTTATAATGGGAATGATTTTTAC 129204 30 100.0 36 .............................. TCCGTTCCGCGCAAACTTGATATTGTGCAATTGCTT 129138 30 100.0 36 .............................. AAGAAAACGTAAGATTTGCTTGTCCGTCCAAGTCTA 129072 30 100.0 36 .............................. CGAATCGATCCAAAAAAATACCGACGCCATCATCGT 129006 30 100.0 34 .............................. AAGGGCGTGTATTCTTAGAACCTTCTGCCGGTAG 128942 30 100.0 37 .............................. CCATATGCGCAGCCGTGAAAGAGTGTAAGGCCGTCTA 128875 30 100.0 36 .............................. AGACAGTACGCGCGCTGGCAGGCGCAAAAAAAACGG 128809 30 100.0 37 .............................. ATCCGTGTTGAAAAAAAGGAGAACGCAAAAGCCCTGT 128742 30 100.0 36 .............................. AACGGGCATCGCACGCGGAATTCTATCCCAAAACAA 128676 30 100.0 36 .............................. GGTGTTCGTCTAACCACAAGGGTAACATGCGCAACG 128610 30 100.0 36 .............................. AATAGCTCACCACCGAACCGATTGCCTTTACAGCAC 128544 30 100.0 36 .............................. TCGAGAGCGGCCGATGTCACAATATTTTTGAGGACA 128478 30 100.0 35 .............................. AGGATTGTTCTGTCTTGCCATCCAGCTCCATGTTT 128413 30 100.0 35 .............................. CTATAGGACTTACCTGTCCTATGTGTGTATAGACC 128348 30 100.0 35 .............................. TTTCACATAAACGCCGAAGGCAAGCAAGACCAGCA 128283 30 100.0 35 .............................. GACAAGTAGTCAAGGATTGCCCCGTTTCCGGCACT 128218 30 100.0 36 .............................. TTACGCGCTTCTCGCTACAGTGAGCGAGGAGAACAT 128152 30 100.0 37 .............................. AAGAGTGTATTTGTAGAGGAAGAGTGCTTCAAATTCG 128085 30 100.0 36 .............................. AGAACTTAATAGTAACGTGTTCCGAATCGCAAGAAC 128019 30 100.0 37 .............................. CTCGACATCAAGTACGCCAAGGGCAAGGGCATCCGAA 127952 30 100.0 37 .............................. ATCTGCACCCTCTGGATATAAATAATATAGAATAAAA 127885 30 100.0 37 .............................. TGAAAATTGTCGCTGTCGAGGACGCGCTGGCGTATTA 127818 30 100.0 35 .............................. GCTTCCGATTATCCTACCCTGCCCCGAGCTGCTGA 127753 30 100.0 36 .............................. ATACAGACTGTACCCTATTGCGCTGTGAAGATGGGA 127687 30 100.0 35 .............................. ATAACAGAGTTCACGCATCAATCCGAGAAGCACCT 127622 30 100.0 36 .............................. CGGCACTCAAGACTGACTTTAAAATGTCAATCTTTT 127556 30 100.0 38 .............................. GAAAATGAGAAAAATACTACTGCTTGCCATCTTTATGA 127488 30 100.0 34 .............................. AAGCTCTGCAAGGGCTTCGTTGTTGCCCCTGATT 127424 30 100.0 35 .............................. GCGACAGCCTGCGCAACGATTGTTGCGATGTCGTC 127359 30 100.0 36 .............................. CCTAATCTCCGGCCCTCTTTGACAACCTTATTGATT 127293 30 100.0 36 .............................. TTTGAAATACTATGATCCGGATCGTGAGCTGCTCCT 127227 30 100.0 36 .............................. AACAGGCCTAAGATCAAGCGCACCCAGTCGGCCTCG 127161 30 100.0 34 .............................. CAAGCCCGAAGATCGTAGCCAAGGGCGATATACG 127097 30 100.0 36 .............................. ACTTATTCAGTGCTTGAATGCGGAGGTTCACCGTCT 127031 30 100.0 35 .............................. AAATGAGTTTAAAAGACTATTGTAATAAAGCAGAT 126966 30 100.0 36 .............................. AGCCTTTGGCAGACCTCGAAAAAGACGGATCACTTC 126900 30 100.0 37 .............................. GCTCTTCTGCACTGTAGAGTCCGCGCGCACTATCCGC 126833 30 100.0 37 .............................. TTCAAAAAAGGTGCCTCTTTCGCGAGAAGCCTTCAAT 126766 30 100.0 37 .............................. GTGGAAGATTTTACTGTCATCGTGAGAGATTCAAGCA 126699 30 100.0 35 .............................. TCCGCCACGCTCAACGGCTCCGGCCCGTTGAAAGA 126634 30 100.0 35 .............................. CGTTAGGCGTCAATTCCAACTTCTTCACAAACTCC 126569 30 100.0 37 .............................. TTTGCCGCCGCAGCTCCCCACACGGTTCCCACATGAG 126502 30 100.0 34 .............................. TTTAGAGCTTTTAGCTGTTCGGCTGCTTCCATTT 126438 30 100.0 36 .............................. TGCATTTGCTGCAAGAAGTCCTATCAAACAACCTCA 126372 30 100.0 35 .............................. CAACGCCAAAGTAAGTGGTGAGGGTGTTATCAAGG 126307 30 100.0 34 .............................. AAATCTTAGGCGGGTCTGTTATATTAATTATTTC 126243 30 100.0 36 .............................. TTCAACGACCTTGCCGTGCTGGAGCGTACGAAGTTT 126177 30 100.0 36 .............................. ATCGAGTTGCCGGACTCGTGCGCGCGGATTATCCCT 126111 30 100.0 35 .............................. CCGGCAAAGGTCGCCGATCGCGTCCCCCTTGGACA 126046 30 100.0 36 .............................. GCCATACAGCCGCGGTAGGTGTCACGCGCGAAGGTA 125980 30 100.0 36 .............................. AACGCTCGGCGAGGGGGTACTGTACCTATATAGATC 125914 30 100.0 36 .............................. GACTTTTTCCCCTATTGGAAGAGGGTAAGCGGTATT 125848 30 100.0 36 .............................. AAAGATAGAATCCGAGTTCTATGTAAAGCTTGTTTT 125782 30 100.0 36 .............................. TAATACCCATCGAGTCAATAGATAGAAAAAAAGTGC 125716 30 100.0 36 .............................. GGAAATATTAACATTTTGACTTCCATATATTGTATT 125650 30 100.0 36 .............................. AGAAGAAAATAATCCAGATGATTTTGAGGTGAAAGT 125584 30 100.0 36 .............................. ACATTTGCCTTTTACATAATTTACATTATCTACAAA 125518 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 76 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TACGTCTGTTGTGTCCAAAATTTCCTCCCAAGGCTTTCCTTCCCAGTCGCCGAAGTTCATCTCCTTCAGCCGATCGTCTCGGATGGCATCGGGATAGCCGCAAAAGGCCGCCAGCTTGGCTGCACGCTGCAAGGGACTGGTAAAGACAGCCTCCGGATCGAGGCCTTTGAGACGGGCACACGCCGCCGTAGCCTCCTCTTCGAAGGTATCGCGAACGTCCACATCGGTGAATCCGTAGCAGTGCTCATTGCCATTGAGCAGCACCGAAGTGTGGCGCATCAGATATATTTTCATCAGTGGATTATTAGAGTATCGGTCGGAAAAAAGCCTTCCGAGTCCGACAAAGATAGTAGAAAGAGAGTGCATCTGAAAACAGACCAATCGCGTGCTATCGATCAACTGAGAGGATGGAAGTGCTTTTGTATTCCGGTTCGGAAAATTGCCCGATCTGCATCCGTAAAAACGTGGAGCGAGAATTTTTTCGTTTTGGTGGAGGACTT # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGTTCTTCAGTTCTAAGAGTTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 90638-88165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQJE01000014.1 Porphyromonas gulae strain OH3161B contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 90637 46 100.0 30 .............................................. TTTCTATCTATATTGATCTCATTGAAATCT 90561 46 100.0 30 .............................................. ACACAAGTTATCGCTTCTATTTACATGATG 90485 46 100.0 29 .............................................. TCAAAAGATAGTACTCTCTCATGAGTTAA 90410 46 100.0 30 .............................................. AATGTGTTTACCAAGATACTCATTGTATTT 90334 46 100.0 30 .............................................. TTCTTCGTTATTTATTTCATAGTGTGTCAA 90258 46 100.0 29 .............................................. ACTGATGCTTTTATCAGTGTCGTGATATT 90183 46 100.0 30 .............................................. CATACTGATGATATAGTTGACAGTATAACC 90107 46 100.0 31 .............................................. TTAGTTGTGAGTATAAAAGCTAAGAAGAAAA 90030 46 100.0 30 .............................................. GCCTGTACCTATACAGGATTCCTCCAGTCC 89954 46 100.0 30 .............................................. TACGCGGCGCATCCGGTGCTGTTTGGGAGG 89878 46 100.0 30 .............................................. TTATCTTTAACTATCTCAAACGCTTTATTT 89802 46 100.0 30 .............................................. TCTTGATTGATTATCAAATAACGGACTACT 89726 46 100.0 30 .............................................. ACAGGAGGAATATGTCTGTGTTCGTCTTTC 89650 46 100.0 30 .............................................. CCTCGTTGTACAATTGCGTACCTTTTCGAC 89574 46 100.0 30 .............................................. TAAGTACCCATTTCACCATCTCCCAGCAGG 89498 46 100.0 30 .............................................. AACTTTCTTCTCCCGTTTTCACGTTTTATT 89422 46 100.0 30 .............................................. TTATCGAAAGAAGTGAGAACTTCGTCGCCG 89346 46 100.0 30 .............................................. TAATTAGCTACTCCTTGTCCATTTATTTCG 89270 46 100.0 30 .............................................. CCCCAGCTCTTTTCGCCCTCAACCCAAAGG 89194 46 100.0 30 .............................................. TTGTCAAGAACATGATCATTCAGAAGGTGC 89118 46 100.0 30 .............................................. CATGCTCTCACCGTATTGCAGAGCGAAGTA 89042 46 100.0 30 .............................................. CTCTGAGAGACCTCATAGCGGTTTTTCAAG 88966 46 100.0 30 .............................................. GCGGAGTATCTGCATGGAAGCTGATAACAG 88890 46 100.0 30 .............................................. AGTGAAGAGTTCCGAGGCATAAAGCCTGAA 88814 46 100.0 29 .............................................. GGTATATCGAGCACGATGGGGGGATCGAG 88739 46 100.0 30 .............................................. GCATATCTTCCACCACAGAGAAAACATAGA 88663 46 100.0 30 .............................................. TATTCGGCCACAGACTCCATTCCGAATTTT 88587 46 100.0 30 .............................................. ATGCTCTTGCCAAACGACACGGAGATAAAC 88511 46 100.0 30 .............................................. TCCCCTACAGCAGAGCCATCTGAATTACTA 88435 46 100.0 29 .............................................. TTAGAGAGATACTTCTTTATTTCGCGAAG 88360 46 100.0 28 .............................................. CCGAACCAAGATTCATCAAATCTGACAA 88286 46 97.8 30 .................C............................ TAATTAGCGACTCCCGTTTCATTCGTTTCA 88210 46 97.8 0 .............................................C | ========== ====== ====== ====== ============================================== =============================== ================== 33 46 99.9 30 GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCAATACATATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGATACTGCAGCCGACAGGAAACGTGCAGCAACCTTTCGCAAAAACCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATATATATTAGGCGCTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGAGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCGGCCATGGAGATCATTTGTGGGAAAGGAAGAGAATATTATCAGCCGCCCCTCCAACTTGAGCTTTTTTGAATATATCCTAGCATCTTTTGCGGAATTAACCCTTTTTATCTGGGGTATAGAAATTAAAAAGCCGAGATTTCTCTCGGCTTTTCGGTTACACACAGATGTTTTTTTCTTTCTCTCAATCCCTCTCTATATCCTCTATTACAGGTGATTACGGGGATTCT # Right flank : GAAAAAATGGAAAGCACAAAACCCTGAAAATAATAATCTACTCAAAAATCATGCACCAAAAAAGTTTTCAACAACGAAGATGAGTTTGGAATGATTCCAAATAAGCATCTGCGGAGAAAAGAAAAACGAGGCAAAAGTAGCGAGGAAATGGACTTTCACGGACTAAAATACGAATTAAAACAAGCCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATATAAATCGTTTCTGTTTTATATATAAATCGTTTTCAATAAATATATAGATCGTAAGTGATTTATATATAAATCGCAGACCCCAAAAAGCCTTTTCCGAAGTCGGAATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAGTCTGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCAATGTAGCTGCACGATTCCGCTCTGCGATCTCGGATCGGATCGAGGGCTGTCGCTGTACCGAGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAATTACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //