Array 1 71326-70317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRG01000069.1 Leptospira santarosai strain 56163 Contig069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71325 29 100.0 32 ............................. GCGGTATCCCGGACTTTCATTTGATAAAATTT 71264 29 100.0 32 ............................. GCGGTATCCCGGACTTTCATTTGATAAAATTT 71203 29 100.0 32 ............................. GCCAGATCGTTAGATTCTATGAAGATCTTTCT 71142 29 100.0 32 ............................. AATCCCAAACATTTGATAACGCGAAAATGGCC 71081 29 100.0 31 ............................. GAGAGTTCCAACACTCCTGATTTTATTGGAA 71021 29 100.0 32 ............................. TATCCGGAACGTCCTTATGGAAAAGGTCGCTC 70960 29 100.0 32 ............................. GCAGTAAACGGTACTGCAACTCCAGAACTTGC 70899 29 100.0 32 ............................. GATGAATACTTTAAAAGTAAGAAGGACTTTGT 70838 29 100.0 32 ............................. AAAAAGAATCGTATCTGTTCCAGTGACCAGAC 70777 29 100.0 32 ............................. GTTCCCTCTCTCAAAAAATTACTAAATTTTCT 70716 29 100.0 32 ............................. AAATCCATTTTGCATCACTTACCTGTATATGG 70655 29 100.0 32 ............................. TTTCATCTTGAACCGCCCGGACGACTTGTTCT 70594 29 100.0 32 ............................. AAAATTCCAAGTTCTTCCGATCTGCAAACGCT 70533 29 100.0 32 ............................. TAGAAAGGCGTCCGGCTGTGGTAGCGGATTGC 70472 29 100.0 32 ............................. GAACGTCTCTTCCAATTTCTGGATATTCGTGA 70411 29 100.0 32 ............................. CGATCGAATGGGAAACGTCGTTCGCAACACAG 70350 29 93.1 0 .......................C....A | TT,TAC [70320,70326] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CATTCATTTTAAATCCAAAACCTGAAAACGTGGGAGTTCCCACAAATTACGTCTCTTTACCGATTTGAAAGAATTTTTTACAATGAAGTTTGTGTATGGAGGGCGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTCGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCTCATTTGTCCTATACAAGTTTTTAG # Right flank : AGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAACACGACGGTATAAGGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCAACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGAAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16550-15911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRG01000084.1 Leptospira santarosai strain 56163 Contig084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16549 29 100.0 32 ............................. TTCGCGCGTTTTTAAAAAATTGGAATCAGGTA 16488 29 100.0 32 ............................. AATACGCCAAGCAATACACGAGGCACCAAAGA 16427 29 100.0 32 ............................. ACCACGTCGATCAGGAACATTAAACGTAGTCG 16366 29 100.0 31 ............................. AAAGAGCGCACATGATGACGCTGGCGCTCAT 16306 29 100.0 32 ............................. TGAGGCTTAGAAAAATCGGAGTCGATGTTCCT 16245 29 96.6 33 ............C................ AGCCCGAAATTGTAGTAGAAAACAAAACCAGAC 16183 29 100.0 32 ............................. GGTCCCCGATTTGGACCGGCTCCTCTGTTTTG 16122 29 96.6 32 ............C................ ATCCTCGTGCTGAAATATCTTGGAGAAAATCT 16061 29 100.0 32 ............................. TTATGGATACAATCCGTTTTGGCTGCTGCTCG 16000 29 96.6 32 ............C................ CACACCGCGTAGATTTGCACCGCATAGATCTG 15939 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCAATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCTAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACCTCTTAAAATTCCTATACAAGTTTTTAGC # Right flank : AATGAGCAAATTTCCCACGCGTGGGAAATTTCCTTTTCCCCGGTTGAACCGCTTCCCACCATACGTAGTCGCCCTAAAAAAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGGTTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGGCAACTCATCAGTGAAAAAGGCGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCACACGCGTGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //