Array 1 98719-99662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIFT010000003.1 Escherichia coli strain 50017 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98719 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 98780 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 98841 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 98902 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 98963 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 99024 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 99085 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 99146 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 99207 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 99268 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 99329 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 99390 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 99451 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 99512 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 99573 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 99634 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125362-127220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADIFT010000003.1 Escherichia coli strain 50017 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125362 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 125423 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 125484 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 125545 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 125606 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 125667 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 125728 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 125789 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 125850 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 125911 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 125972 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 126033 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 126094 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 126155 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 126216 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 126277 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 126338 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 126399 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 126460 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 126521 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 126582 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 126643 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 126704 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126765 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126826 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 126887 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 126948 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 127009 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 127070 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 127131 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 127192 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //