Array 1 49546-49977 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMQH01000015.1 Chryseobacterium sp. Leaf394 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 49546 47 100.0 30 ............................................... TTTGGCTTTGTTGGGATCCGGAACAAAAAG 49623 47 100.0 30 ............................................... ACCGTAAAAAGACCTTAAGCAGACGTAAGG 49700 47 100.0 30 ............................................... TGTTGTTAAATCTTTGTCATCTCAAAACGA 49777 47 100.0 30 ............................................... AGCTACCAACGGAGGACTTGACGAAATATT 49854 47 97.9 30 .............................................G. TCCTCACTTTTAAGGATATTTAAAGCTATA 49931 47 97.9 0 .............................................G. | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 99.3 30 GTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAAC # Left flank : TGGCTGCTACCGGTTTGTGCTGCTGAAAGAAATCTTTTACAAAACTTAATGCAGATTCATTGACACGCAGTTTATCAGGATTGATCACCCCTCCAGGCAATACCAGTGCATCATAATCAGAAGCTGAAACCTCATCTAAAGTTTTATCTACAGGATATTCCTTACCCCAGTCTTTCTCTGCCCATGCTTTGATGCTCCCACTCTCCGGACTGATAATGTGAGCCGTCCAGCCATGCTGTTCGATATGTTCTTTAGGAGAACTCAATTCACTTTCTTCGAAACCGTGTGTCGCCAGAATGGCAATTTTCTTAGACATAATATTATTTTTTTTGGTGTTATGCCAATACTTAAGAAAATATAATGCCGAGGCCGTTATTGTGGTATTTAAAAAAATGTTAAAGTAGTGATGGCTGCCGGTTGTTGGCTTCCATAATTGTGCTTTAAATCAGACACTCAAAGTGTACAACAACTCCGAACGGAAAAACTCATAAAAGATAAGC # Right flank : CTACAGCCGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCAAATTAAAAGTGTTACAAATTGTAGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCGAAACAGTTTGATATTGGAAACCTTTTTTGGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGCGATACACAACAGCTTCAGGGCAGTATATCGCCGACTGGTTCCAGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCACGCTGAACAGGATAAAGCCCTAACCGCCAGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCGCGCCTCTAACCATTGCCTCATTATTTCTTGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCTAATTGAACTAACAACAGATGAAAACCGTAGTTGTGAATTGCTTTCATTTTTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAAC # Alternate repeat : GTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCATTTTTCCGTATCTTTGAGATACAACACAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 50067-52731 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMQH01000015.1 Chryseobacterium sp. Leaf394 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 50067 47 100.0 30 ............................................... GAAACAGTTTGATATTGGAAACCTTTTTTG 50144 47 97.9 30 .................................C............. TTCAGGGCAGTATATCGCCGACTGGTTCCA 50221 47 100.0 30 ............................................... ACGCTGAACAGGATAAAGCCCTAACCGCCA 50298 47 100.0 30 ............................................... GCGCCTCTAACCATTGCCTCATTATTTCTT 50375 47 100.0 30 ............................................... TAATTGAACTAACAACAGATGAAAACCGTA 50452 47 100.0 30 ............................................... ACACCACCGGAAATATTGTCTTCACTGCTC 50529 47 100.0 30 ............................................... TTCAGAAACAAGGATACCCTCGTCTGTGCT 50606 47 100.0 30 ............................................... AAAATGGATTTGTGGATTTGACGTATTCCG 50683 47 100.0 30 ............................................... TTTGGACACGTTGGTTAAAAACGATACCGT 50760 47 100.0 30 ............................................... GGGTTCTTCTACTACTATCTCATCGTGTAC 50837 47 100.0 30 ............................................... CGTGACGGATTTGCAAACCTCTTTCATCGT 50914 47 100.0 30 ............................................... TTATTCAGGATATGGAGTTGAGTTTAATAA 50991 47 100.0 30 ............................................... ATCAATATTCAACAAACAACTAAACGAACT 51068 47 100.0 30 ............................................... GGTTTTGTTTGCGCTACAAACCCAATGAAA 51145 47 100.0 30 ............................................... AATTCCAAAATTTTCAGCGAAAAGAAAGAT 51222 47 100.0 30 ............................................... ATCTGTGAAACATCATTGAAGGGGAAGGTT 51299 47 100.0 30 ............................................... GAAGGTTATGAAATAGAAGTTTCAGTATTG 51376 47 100.0 30 ............................................... ATGAGTGATACAATTGCAAGTTTAAAACTT 51453 47 100.0 30 ............................................... AAACAATAATGATTACCACTGCTGACATCA 51530 47 100.0 30 ............................................... AGGCGCCGCGTCGACCTCTTCGATCTGAGT 51607 47 100.0 30 ............................................... TCTCGACCACGATTGTTCATCCATTTGTTG 51684 47 100.0 30 ............................................... AAAGGAATCGTTTTCCAGGTCATAAACTTT 51761 47 100.0 30 ............................................... TCGGGGCAACCAAGCGAAAGCGGGGAGGCG 51838 47 100.0 30 ............................................... ACACCTTTTTCTCAAACGAGTTAAGCTATG 51915 47 100.0 30 ............................................... TAAGCTATTGAGAATCAGCAGGTTACACCC 51992 47 100.0 30 ............................................... AAATTCGTACGTCACCACCGGCTTTCGTTG 52069 47 100.0 30 ............................................... AAAAAAATAAATTATGAGTGTAGATATTTG 52146 47 100.0 30 ............................................... TTCAATTTTAATGAAATCTATACCATTAGT 52223 47 100.0 30 ............................................... TACATTTATGTATCCATTTTCTTCAGCTTT 52300 47 100.0 30 ............................................... TATCCCGAAAATTTAAGCTCTACATTAGGT 52377 47 100.0 30 ............................................... AGACCCCGCTATAAATTTCCGCGTCAATAT 52454 47 100.0 30 ............................................... CTTCGACAAACACGATCACCGCGCCGGGCG 52531 47 100.0 30 ............................................... TTTTTGCGCGATCTGCTCAATATCTGCGGC 52608 47 100.0 30 ............................................... CTTTATTTCGACCGACGTAAGCGAAACCGC 52685 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 35 47 99.9 30 GTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGC # Left flank : TCGGTATCTTTGGGATACACAACAACTTTGGCTTTGTTGGGATCCGGAACAAAAAGGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAACACCGTAAAAAGACCTTAAGCAGACGTAAGGGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAACTGTTGTTAAATCTTTGTCATCTCAAAACGAGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAACAGCTACCAACGGAGGACTTGACGAAATATTGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCTCCTCACTTTTAAGGATATTTAAAGCTATAGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCTACAGCCGAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCAAATTAAAAGTGTTACAAATTGTA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTCAGTCAGTGTCAGTGTGTCAGTATGTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGCCTCAAAATTTAACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTTTCAGAGGGTTTGTTTTTGTTTTAGAAATACTGTTTTTGCTTTTTTACTTAATGAAAGAATTACAATAGTGGATATTTCTATTTCTAAGTCAAGACTGCTTCGTTTCTCGTAGTGACATGCAGCTAAAAAAGTTCGAGCTGTTGGAAAGTCGGCGGCGGTTCTTCTCTATTTCGGGCAAAGAAAATTTCGATATCACCAAATTGTTTGTCTGTAATGCACATAATAGCTACTTTACCAGCTTTTGGAAGCATAAATTTCACTCTTTTAATATGTACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTCGGTATCTTTGGGATACACAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCATTTTTCCGTATCTTTGAGATACAACACAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //