Array 1 63750-61408 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKF01000010.1 Moraxella catarrhalis strain 20/122/1 NODE_10_length_63782_cov_22.330092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63749 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 63689 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 63629 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 63569 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 63509 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 63449 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 63389 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 63329 28 100.0 32 ............................ AATCAGGGGGCAAAGGACGCACGCCACAAATT 63269 28 100.0 32 ............................ CAAAAATGATGGCCACAAAGTCAAACACCCAC 63209 28 100.0 32 ............................ CTAGCCGCTGGCATCATGCTGACCGCTTTGAT 63149 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 63089 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 63029 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACGCTCCCC 62969 28 100.0 32 ............................ GAGCTTTGACAAGAAAGCAAGAGCAATTAACT 62909 28 96.4 32 .......G.................... CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 62849 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 62789 28 100.0 32 ............................ CTGCTAGTCGCATGAAAATTAACAGCAATGGC 62729 28 100.0 32 ............................ ACTGATAACAGCGACCAAAAAAAGAAAATCCG 62669 28 100.0 32 ............................ TGCCGTATCTTGAATTGAAAGCAAGTCCATTG 62609 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 62549 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 62489 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 62429 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 62369 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 62309 28 100.0 32 ............................ ATTATATTCGTTATTGGGTGCATTAGTTATAC 62249 28 100.0 5 ............................ TTAGC Deletion [62217] 62216 28 100.0 32 ............................ CAGTATTAATCCGTCTTCTTCACGACCGCACA 62156 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 62096 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 62035 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 61975 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 61915 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 61855 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 61795 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 61735 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 61675 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 61615 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61555 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 61495 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 61435 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ATTTGGCATGAGCATCTGAGAAATACCGCCTA # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 593-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKF01000036.1 Moraxella catarrhalis strain 20/122/1 NODE_40_length_608_cov_1.153846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 592 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 532 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 472 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 412 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 352 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 292 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [250] 249 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 189 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 129 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 69 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GATTAATACCGTGCA # Right flank : ACATTAAGAGCTTCAAAAATCGGATTAAAAGCTCTTCACGAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //