Array 1 49792-49343 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSW01000105.1 Acinetobacter baumannii Naval-82 ctg7180000004786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49791 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [49781] 49730 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 49670 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 49610 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 49550 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 49490 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 49430 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 49370 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGTTTCAGTCTGGACAAGTGCCGGTATTTTTAATCAGTCTGAAAGCAGGAGGGGTCGGTCTGAATCTAACTGCCGCAGATACGGTCATTCACTATGATCCATGGTGGAACCCTGCTGCTGAAGATCAAGCTTCAGATCGTGCATGGCGGATTGGACAGGACAAGCCGGTATTTGTCTATAAGCTGATTACTAATAAAAGCATAGAAGAAAAAATTCTTGCCTTACAGCAAAATAAAGCAGAACTGGCACACTCTATTCTAAGTACAGATCATGAAGGCGAAGTGAAACTGACGGAAAATGACGTGATGAACTTGTTTGAGAAATTTTAGTTTGGTTTCAGATTACCCTAATCATCTGTAAGTATCTGAAAGTCTGGATGCAATTTTTTCCAATGTTCTCTTAATTTTTCTTTATGAACAGAAATCATAGGTAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAA # Right flank : TATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTACC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3604-3034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSW01000169.1 Acinetobacter baumannii Naval-82 ctg7180000004765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3603 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 3543 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 3483 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 3423 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 3363 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 3303 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 3243 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 3183 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 3122 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 3062 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GCGTAGCAGGATCAAACCAAATGGCAATATTTCCACGATTAATGAGAGCTCGGTTATATGAAGACCAATTGGTTGTGCGATAAATTTTAGGTGTCGACTTATTCATTTGAAAATTATATTGTGGAATAAGCCTTTAGAGATAGGTTTGTGCAACAAAGCCCCCTAGATCTGTCATGAGTTCATAAATTTCATTACACGATAAAAAAGTCATTTCACTTAACCTACATATCATTTTGAGGTATTTCTAACGAATCAAGAAACAAAATTCTAATGAAGAAACAGCGATACTATAAAAATAAAATTAGCTGCGATGGAAGGCTACTCTAAGTCGATATAAAAATTAAGCTTCTGTTGCGTACGAGAACCTTATTTTTAGTAATCTATTTTTGCATCACGCCAAAGCCATAATCATAAGACCAAGTAGGCACTTCATCTCTATTGTAAGGTGTTAAAGATATACGGCAGCCTTGCTCATTGGCAATTTGGTACTCTGCTTCGGA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATTTTATAAATAACTGTTTTATATAATTTAATATTTATAAAAAAATCCCAGTGTACACCACAGTGTACAAATTATCTATTGCTAGGCTATTTTACTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCCCTCACGCGCCCGCGCATTTTCTTGATTATTGTCTGACGGTATAGCGGTTTGCTGTGTTTTTTCGCTCCCATCATTTAATTGAAGCGGAATAGAGTATTTAAAGCTGCCCCTCTATTTGGTGGCTCAGGGGTCCCGAAAATTTGGGAGATTGAACATGGTGACTTTGGGTAACTCAGTTATCTACTGACTATCTTTAAGCTACTCGCATTTTAGAGATGTCCACACTGTATGACTGTACGAAAGTTTCGTAGTTCATTACCCAACGGAAATTTTCGCATACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38432-31076 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMSW01000159.1 Acinetobacter baumannii Naval-82 ctg7180000004868, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 38431 30 93.3 30 ............................AC ATCTTTCAATCAACCTATCAATGATTGGGA 38371 30 93.3 31 ............................CA AGCAATACCACAGTACGTATTGCCGAAGGTG 38310 30 96.7 30 ............................G. TGTATCAATACGCTTACTAAGTGCCAAGTC 38250 30 100.0 30 .............................. AGTCTTAAACTCAAATTCGTATTCATCCCA 38190 30 100.0 31 .............................. TGAGCAAACAGTAGAGCTTTATGCTTCAGTA 38129 30 96.7 30 ............................A. AAACACCCTGAGTACTAGCTTTCGTACCGA 38069 30 93.3 31 ............................AA TCTTAAACATCAGTATGGGAAATACATCAAT 38008 30 93.3 30 ............................GC ATTACGGCTGCTGTAGAAGCCTTAGAGACT 37948 30 100.0 30 .............................. TCGGCGGGAAAACATTAATTGATTGATCGA 37888 30 93.3 30 ............................GA ATTTAGAATCAGCTCCAGCTGTGTCATAAA 37828 30 100.0 30 .............................. TATATGGGTTTACCTTCCCATCTTCTAGGC 37768 30 96.7 30 .............................G ATGCGTCCTTTAAACAACAGCAATAACGTT 37708 30 96.7 30 .............................C AAAATTCAAGAAATTTCTGGAACAAGTTGA 37648 30 93.3 30 ............................GG ACAAAACATCTAGCGTCACAAAAAGTACTT 37588 30 96.7 30 .............................C TGACTCTGAAAACATCTTTGAGTTCAAAGA 37528 30 93.3 30 ............................AA GCTCAGATTTAACAAAATCTGAAATTTGAC 37468 30 93.3 30 ............................GC CAACGACTTTAAACTCTTTAGTATTGTCAT 37408 30 93.3 31 ............................AG TGACAGAGGTCGTTCTCGGTACAGTTAGGGA 37347 30 96.7 30 ............................A. ATGTACTATACATATAAGCCATATAATCAG 37287 30 93.3 30 ............................GA AAGAAGGAATCATCCAAGATGGTAACGGAT 37227 30 96.7 30 ............................A. TGAATGAGCCAGAAACGTAACCAGTGCCAC 37167 30 96.7 30 .............................G TCCACTCCAGACCAATCACAGTGTCCATGT 37107 30 100.0 30 .............................. CAGTAAAAATGAGGTACAAGCAATTTGTCA 37047 30 93.3 30 ............................AC CAAACGGATATGTGAGTGTTGTTCGTATTG 36987 30 96.7 30 ............................A. AGGTTTGACGAGTAAGCGGATGAATCATAT 36927 30 93.3 30 ............................AC GAACCGTTTTAAAGCCGTACAACACATCTA 36867 30 93.3 30 ............................CG TCACGGCAAGCGTGGATCTGTAAATGTTCA 36807 30 93.3 30 ............................AA AATGTCTGATCCAGCATCACGTGAATAAGA 36747 30 93.3 30 ............................AA ACAGAGTGTTATAGCCATGCTTAACACCTT 36687 30 93.3 30 ............................AG TCAGGCACTGGTAAATCAACAAGTCTTCGT 36627 30 93.3 30 ............................GA CTAATAGCAAGTTAGATACAACTAATTCTA 36567 30 100.0 30 .............................. GAAAACCACCACCAGTTCCTTTACCACCTT 36507 30 93.3 30 ............................GA TTTAAGCTGTCCATTATTAGCCAGCCAAAC 36447 30 93.3 30 ............................GG TTACTTTGCCAAACGGTACTGTTATTCCGC 36387 30 96.7 30 ............................A. GCGCGGCAACCATGCGGTCTATGACTTCCA 36327 30 96.7 30 .............................G ACTCACCTCTGCAACAGAAGTAGGTGTTGC 36267 30 93.3 30 ............................CC AAGAAGAAAGGTAAAACTTGGAAACACTTT 36207 30 96.7 30 ............................A. TCAAATAAATTTTCTGAGTTTGAGCCTTCA 36147 30 93.3 30 ............................GA GGAGTAAGACATGGCTGATAAGGCTTTAAT 36087 30 100.0 30 .............................. TACGCTGAACATTCTTGTTCTGACGCCAGA 36027 30 100.0 30 .............................. GTCGCGGGTCGCCCATGTTTTCAATGGCCT 35967 30 96.7 30 .............................G ATTTGTGAGCAAGATTGAACGTTTCGTATC 35907 30 96.7 30 .............................C AATAAAAGATGGGGCAACTAGTGCCCCGAT 35847 30 96.7 30 .............................G AACGTCAGATCTTTGCTGACATCGAGGGGC 35787 30 96.7 30 .............................G AACGTCAGATCTTTGCTGACATCGAGGGGC 35727 30 93.3 30 ............................AA GCAGCAAAGTTAATGCTGTATAAAGTATTT 35667 30 93.3 30 ............................GA ATTTATCGGCATACTTGGAAACTGGTATTT 35607 30 93.3 30 ............................CA ACAATTCAGGATCCTGTAACTAATGTCGTT 35547 30 93.3 30 ............................AG TACGTTACAACATCAAATTTGGTCAAGGTC 35487 30 96.7 30 ............................G. CAACACAACGAACATGGGTTGGTATGACAG 35427 30 96.7 30 .............................G TTGTTAGGGCTATTTCTGCTTTATCCGATA 35367 30 96.7 30 .............................G ATGGTGCTGCTCCTCCTAGCCCTACGGGCA 35307 30 93.3 30 ............................CC TGAGCTATTAGCTAAAGAAAGCAGCTTTAA 35247 30 100.0 30 .............................. CAAAACTGGTCTTGGCGGTGTCTTAGTGAA 35187 30 100.0 30 .............................. GCACTAAACGCTTAGTTACAGACCAACCTT 35127 30 96.7 30 .............................A AAAAGGCAAGCGCACTCGATGTACCAAAGC 35067 30 93.3 30 ............................GC CAAATTTTGGCTTTTCACATGTCTAAATGT 35007 30 93.3 30 ............................AA ATACATTATGACCCTGCAATAACTTTGCAG 34947 30 96.7 30 .............................C AAACAAAACCTAATGACCCTACAGCACCTA 34887 30 100.0 30 .............................. AGACATTTTTAAGCCAGTAACAATAACTGT 34827 30 93.3 30 ............................AA CGTTTTTTTAAACGTGACTCAAATCGTAAA 34767 30 93.3 30 ............................CA AGCACGAGGCCAATCTAGCATTCTTGCTAA 34707 30 93.3 30 ............................AG GCAACAGCAATACAAATTGCTATGCCTACA 34647 30 93.3 30 ............................GC TATGGACAGGTTCGTTTAAAAGTTAAATTC 34587 30 93.3 30 ............................AG TGAGGATTCACACCTAGAAACTGGGCAGCT 34527 30 96.7 30 .............................G CTGCTTGAACAACATGAATTGCCCATTCAG 34467 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 34407 30 93.3 30 ............................AG AAGCGTCATGAATATTTGGTTTGGCTTGAA 34347 30 96.7 30 .............................G ATCATTAGTGCCTCTTCGGAAATCAACTTT 34287 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 34227 30 96.7 30 .............................G AAAATAATTAAATGGTCTATCACCGTCTTC 34167 30 93.3 30 ............................AG TAGATGCAGCACACAGCAATCAGGGCGCTC 34107 30 93.3 30 ............................AG CGCGGAAGAGCATTCGGGTGAGTTGGATTA 34047 30 93.3 30 ............................AG GCAAAAGGAACGGCTGGCTAACGCCACTAT 33987 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 33927 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 33866 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 33806 30 96.7 30 .............................G ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 33746 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 33686 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 33626 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 33566 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 33506 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 33446 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 33386 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 33326 30 96.7 30 ............................A. TATCTAAGCGTCCCATTAGAAAACCTTTAT 33266 30 96.7 30 ............................A. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 33206 30 96.7 30 .............................G TTGACCCATCTATTGATGCATCTGTAAATA 33146 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 33086 30 96.7 30 ............................A. GTGAACATGCATGCATTGATGCAATATGCG 33026 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 32966 30 100.0 30 .............................. TTTCACCTGATGGATGCTGTATTAAATCGC 32906 30 93.3 30 ............................AG AGGGTTATGTTTTGGTTTCTAAGGATAAGT 32846 30 96.7 30 ............................A. CATACATTAACTTTAAATAATCATTCTGAC 32786 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 32726 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 32666 30 93.3 30 ............................AG TTGCCCGGATCACGACGATCATTAGAATAA 32606 30 100.0 30 .............................. GGAGTCATCAATAAGAAACAATCCATTTAA 32546 30 96.7 30 ............................A. CTAATCGATGGTGAAGATTTTGAACAAGAT 32486 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 32426 30 100.0 30 .............................. AATGCAATTCGGAGCATGGCGTACCGAAGA 32366 30 100.0 30 .............................. GTGTGGACTCCTCAATCAGCATCTTGAAAT 32306 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 32246 30 96.7 30 ............................A. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 32186 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 32126 30 93.3 30 ............................AC TTACCAGACACAGCACCTTCTTGAAGCATC 32066 30 96.7 30 ............................A. GACGGTTAGTTACTTTTGATGTACCGCCAC 32006 30 93.3 30 ............................AC TAACTCACCGCGATAAATAGACGCGATACC 31946 30 93.3 30 ............................AG AGACACAGAAAAAGAATGTGAACAATGGGC 31886 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 31826 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 31766 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 31706 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 31645 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 31585 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 31525 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 31465 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 31405 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 31345 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 31285 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 31225 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 31165 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 31105 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 123 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //