Array 1 88371-88947 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJT01000005.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039529 scaffold_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88371 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 88432 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 88493 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 88554 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 88615 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 88676 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 88737 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 88798 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 88859 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 88920 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105084-106884 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJT01000005.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039529 scaffold_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105084 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 105145 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 105206 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 105267 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 105328 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 105389 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 105450 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 105512 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 105573 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 105634 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 105695 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 105756 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 105817 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 105878 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 105939 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 106000 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 106061 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 106122 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 106183 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 106244 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 106305 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 106366 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 106427 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 106488 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 106549 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 106610 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 106671 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 106732 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 106793 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 106855 29 86.2 0 TAA.........T................ | A [106879] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //