Array 1 340085-339833 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000017.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 340084 37 100.0 36 ..................................... CATTCTTTTCCTCTTTTGCCAAAATTCGGTTTTTGT 340011 37 100.0 33 ..................................... GTATACCGTGGCCGTTGTTATCCTCTGTATACC 339941 37 100.0 35 ..................................... CGAGTCCACAAGGATAATGTCCGTTTTTAAAGTAG 339869 37 97.3 0 ..........................C.......... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 35 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : CTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTTAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTATTTCTCCCGATCCTTTGCGACCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTTTGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGACCTTTCTTTCTCTATCGAAGAGAACGTAGGTTGAAATTACCACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGGTTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCCGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACATTATGCGAAATTAATCGACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 255367-254762 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000001.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 255366 37 100.0 33 ..................................... ATCGTGTGCCTGACAATTATGCGAGCAATTCGA 255296 37 100.0 34 ..................................... TTCAAACTTAATGGAAATTCCGTCTTCGGTAGTT 255225 37 100.0 34 ..................................... CAAAACTTTGTTCCGGAATCCTTGGACACAAAGA 255154 37 100.0 34 ..................................... CCGCATAAGTTGATAGAGCGCGTCATGTACGAGA 255083 37 100.0 34 ..................................... CCGCATAAGTTGATAGAGCGCGTCATGTACGAGA 255012 37 100.0 34 ..................................... TCGTAAGTATATTATTAAATGCCATTATTCTAAC 254941 37 97.3 34 ................G.................... TTCCGCGTAATCGCTTGATATATAACGTCGTAAC 254870 37 100.0 35 ..................................... TGTAACCATAACTCTGCTCCTCAGTCCCAACCCGA 254798 36 86.5 0 ...........................T.-.CA...A | G [254772] ========== ====== ====== ====== ===================================== =================================== ================== 9 37 98.2 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 96999-96776 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000019.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 96998 24 100.0 47 ........................ AGTGGATTGAAACTTTTTCAGAATGCGATTTCAGCCGGTTGATGAGG 96927 24 100.0 47 ........................ AGTGGATTAAAACTTTGTAATTAGTGTTTAATTTTGATTCTTTATTT 96856 24 100.0 33 ........................ CTATTTTATGTGGGATCGATTCCTAAGACATGC 96799 24 75.0 0 ........T...A.....C.T.AG | ========== ====== ====== ====== ======================== =============================================== ================== 4 24 93.8 43 GTTTCTTCCTTTGTTTAAGAAGGA # Left flank : CATGGTTCTTATTCAGAACCATACAATCAATTTCCCAGTATTTTAGGGTTTTGCAGTAAAACTTACGGCTCTCCATTTTTTAGAACTAAAGCAAAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCTCTAGATATTCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAACGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCGCTCAAACGAATAACCACCGTTTAGCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGGCGTCAGTAGGTTCGCGATAATTATGTCTAGAGAAACTAATAAATCTTTTCCTAATACATCAATTAGAGACTGTGCAGCCGCT # Right flank : TTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGATTGTATAAATTCCGATATTCAGCTTTTTATGATAAACTTCAGGTTTATAAAATGAATTGATTCAACCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTATAATATACTTGATTAGAATTTCTAGAAATTTTTATTTTACCGCTCTATACTCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAATCTGAATAACGAAAGTGCCTCACTTCTATTGACGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAGAAAATAATTTAAAATAAACGAACATGAAATTTTTTATCAGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 9586-9913 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000006.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================= ================== 9586 38 100.0 33 ...................................... CACGTAGGGTTACAATACTGATCCGCCGCATCG 9657 38 100.0 33 ...................................... TGCAACTGCTACGGGCACAATCATAGACTTAAC 9728 38 94.7 33 G...................T................. GGCTGATAAGATTATAGAGGTTGTATCTAATCT 9799 38 100.0 33 ...................................... CACTTATCGGCGGTCTGAAACCCTTTGAGCAAT 9870 38 92.1 0 G..........................A........G. | AA,ACAA [9896,9901] ========== ====== ====== ====== ====================================== ================================= ================== 5 38 97.4 33 TGTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : ATGATTCCGAAGATGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGC # Right flank : CCAATCTAGAATAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATATAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGCGAAATCGATACAAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGTACGGTCCTGCAAAGCCGGATTCGCCTAAACTTTCTTAAGTAGAATTCGCATTATTTAGTGTAGACTATCGGATTGGATACTTTATTATGCAGCTCAGATCAGTGCGTAAAAATTCCCTTCTAACTTTTATAATACATTGCTCATAGAGCCGGTCTCAAAACCTAAACACCGACCCTTAGGAAGGTGTTTGCTGAGTTTCACAAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 109375-109554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000029.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 109375 37 100.0 34 ..................................... ACTTGCGAATCAGTCGTATAAGATCGCGGATCAG 109446 37 100.0 35 ..................................... AGCTTCGTCCATAACGGAACGAACGCTTGATATAA 109518 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGCTCCCACATTTAAATACTACAGATTCAAGTATTATAAAATTCTATTTTTTAAATTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTATTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGTGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : CTCCGCAGGCAACCACTGAAAACCCATAACCAACCCACAAGTATTTAGATTTCAATATAGATCTGTCGGAATTACGACAAATCCTCTGTAAAACTGAGTTCCCACCCTTATTTTTGGGTGGGGGCGGAGGTGGAGAAATTCGGAAGACTTTTCTCTATCAGAAAAACATGCTTTTTGCAAGTAAAAAGACTCATTCTTGTCGGGACACTTGAAAAATGTGCGTTTTTGATCCCACAACGCGACCCTTAGGGAGCGATGCATTGAGTTTAGGAAAGCGTTTTGCTTTAGTTCTTTAACGCGATCCGTAGAGAGCGTTGTGTTGAGTTTAATTCTGATTCTAAAATCTTCTTCAACTTGTGGGGTTGGTTATGCTGAAAACCTTCTCGCGTTGCGTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAACAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 8719-8465 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLJK01000010.1 Leptospira kirschneri serovar Mozdok strain M36/05 M36/05_Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 8718 38 100.0 35 ...................................... CGTGATTTCGATCGCAACCGATCCGATTACAGGAA 8645 38 100.0 32 ...................................... TTTAAATCTTGATTCTCGAATTATAAAAAATA 8575 38 97.4 34 ...........................T.......... TTTGGTTTCTTAGAAGAACCACAGAAGAGACGAA 8503 37 81.6 0 ..............G...G..G....C....A.-...G | TT [8474] ========== ====== ====== ====== ====================================== =================================== ================== 4 38 94.8 34 TGTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTGGCTTAACAATTGTACAGTATGGTGAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGC # Right flank : TGTTTAAAATTTTGTTCCTGAAACGAAGATTCTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGGATTGATTGCTCGGAACAATGATTTCTAAGTTTTGTGAGAGTTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAGAATAGGAGTTCCTTTTTATTTTTACGGACTCAAGTTTCTCTTTCGGAGAATGCCTGGTTTGGTAAATTCTACCGTGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAGATTAAGTCTCTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTAATAAAATTAGGGCGAATCCGGCTTGCCACTGGCAGCCGGACCAGGCTCTCAGCTTCGGTCAAGTTATTGTGAAACTACAGAATCAGATTCAATTTTCATAAAATAC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //