Array 1 24121-23017 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZYJ01000022.1 Neisseria meningitidis strain Neisseria meningitidis isolate R135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24120 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24054 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 23988 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23922 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 23856 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 23790 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 23724 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 23646 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 23580 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 23514 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 23448 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 23382 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 23316 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 23250 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 23184 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 23118 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 23052 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.8 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTTGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //