Array 1 625007-625232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDC010000002.1 Clostridium botulinum strain KM126 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 625007 30 100.0 35 .............................. TCCACACCAGTAATGGCATATGTTTTCGTTGGAAA 625072 30 100.0 36 .............................. GCAAATATTCCAAGAAGCAATCAGATTAGATTGCAC 625138 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 625203 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAGGAATAAAATATAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAACGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAACTAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : TAGAGCATTAGATAGTATTTTTATTGCCTTTGGAGAAGGCTTAACATTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATGATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAGGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTGCAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGAAGATAATTATGGTAATTCCATTATTTCATGGGATCACGATATAGATGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 628928-629873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDC010000002.1 Clostridium botulinum strain KM126 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 628928 30 100.0 38 .............................. ACAGCAGTATGTGCCATCTGTAAAGATTTTCCCGAACC 628996 30 100.0 34 .............................. GAGATTTTAAAAAGCAAGCTAAAAAAGCAGGTTA 629060 30 100.0 34 .............................. GTCACAACAGCATTTACACGTCTTGGAGCAATAG 629124 30 100.0 35 .............................. TTAACTTCTGTTATAGAAGTAGAACTTTCATTTTC 629189 30 100.0 35 .............................. TCTATTGGAATAGCTCTATCTTCATTTAATCTTCT 629254 30 100.0 36 .............................. TTCTTATAAGCTTCACTAAAGTAACTAGGTTGTTTA 629320 30 100.0 35 .............................. TGTGTTTATAGAGTGCAATTATTAGGAAGATGTGT 629385 30 100.0 34 .............................. AAAAAAATAGATTTGTTAAAGAATTTTTTGTATA 629449 30 100.0 36 .............................. TCTGTTAACACATTTGTATAAAACTTTACAATATCT 629515 30 100.0 36 .............................. TCTGTTAACACATTTGTATAAAACTTTACAATATCT 629581 30 100.0 34 .............................. AGCCTACACATTCTAAGCCTATTCCAAAAATCCA 629645 30 100.0 36 .............................. GGTTTATTATTCTTACCAGGCACAATACCATATTCA 629711 30 100.0 37 .............................. AATCCATCCTTGCACTCTTGGCAAATATCTTCTCCAT 629778 30 100.0 35 .............................. AAGCCAGCATCTAAAGTATTACAGGCAATTTATAG 629843 30 90.0 0 .................T.....G.....G | G [629870] ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.3 35 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGGCAGAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAGTTAATTAGTGTTTTTTAAAAACATTTAAGATTTAGTTATCCTTGACAAAGTATCCCATTTAAAGAGTTATAATGATTTTTTTAATTGTTATAGCTCTTTATTTTTCTCCGAAAAATAAAGAGATTAAGCTCAAATTTACTTTAAGAATTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACAGCGCTAAAGTGACCTTTTAAAAATTTTCTGAAAATTTTATAAATGGCTGGGAAAGTTTCATTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGAGGATTTTACTATG # Right flank : GAAAAGGGCATGCTAATAACTAATAGAATGGCTGCAATGATTGGTTCATTGCAAGAATAAATATTAAAATGTATTATTGAAATTGTTTATATATAATGGGGGAAAAAAATGACTGAAATACAAATGTGGAATGAATATATTAAAATTAATACTAATGCAAAAGAGTATCAATCATGGTCATTTGGTGGAAATACACCTGAAATGCCAAATTTGTTGGCTGAATTAGTATTAAAGGGGATTAAAACTGCAACTGCTAGTGCATATCCTTGTTATATTGCAGAAAATGCTCCATTACCACCAGTTGGAGGATATAATTTGATATTAAATACAAAAGGTGAGGCTATTTGTATCATAGAAACTACAAAAGTATATACAATACCATTTAACCAAGTTAAGGAGGATCATGCGTATAAAGAAGGTGAATTTGATCGTACACTTATATCTTGGAGAAAATGTCATTCTAAATTTTTTTCTATGGAATTAAAAGAGATTGGTCAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //