Array 1 1263-2347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZF01000001.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N41924 N41924_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1263 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 1324 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 1385 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 1446 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 1507 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 1568 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 1629 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 1690 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 1751 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 1812 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 1873 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 1952 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 2013 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 2074 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 2135 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 2196 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 2257 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 2318 29 96.6 0 ............T................ | A [2345] ========== ====== ====== ====== ============================= ================================================== ================== 18 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19938-21064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZF01000045.1 Salmonella enterica subsp. enterica serovar Kentucky strain CVM N41924 N41924_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19938 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 19999 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 20060 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 20121 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 20182 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 20243 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 20304 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 20365 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 20426 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 20487 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 20548 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 20609 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 20670 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 20731 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 20792 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 20853 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 20914 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 20975 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 21036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //