Array 1 44869-46910 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZF01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2793 NODE_5_length_170199_cov_1.98826, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44869 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44930 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 44991 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 45052 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 45113 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 45174 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45235 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45296 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 45357 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45418 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45479 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45540 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45601 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45662 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45723 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45784 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45845 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45906 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45967 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46028 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46089 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46150 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46211 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46272 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46333 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46395 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46456 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46517 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46578 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46639 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46700 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46761 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46822 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46883 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63043-64030 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZF01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2793 NODE_5_length_170199_cov_1.98826, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 63043 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63104 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63165 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63226 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63287 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63348 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63409 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63470 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63532 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63635 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63696 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63757 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63818 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63879 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63940 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64001 29 96.6 0 A............................ | A [64027] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //