Array 1 33764-33610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCC010000028.1 Paenibacillus typhae strain I2-R2 I2-R2_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 33763 26 100.0 39 .......................... AGTTTTGCGAGCATTTGCATCCTTGATTTCACTTCGAGC 33698 26 96.2 37 ......................A... AGTTTTACTAGCGTTACTTCTGTGAATCAGCTTCGGT 33635 26 96.2 0 .......A.................. | ========== ====== ====== ====== ========================== ======================================= ================== 3 26 97.5 38 AAAACTCGCTTCGGAAGCATTCGCTT # Left flank : GCGTTGATCGTGATGGTGACATGGCGGATACCTAGCTCAAGGATTTCATCCACATGCCGGTAAAGCGTAAGACCGTTAGTGCTGAGGCAGAGACTGACATCAGGGACATGCTGTTTCACCCTTGCAAAGGTGTCGAACGTCTGCTCCGGATTGGCCAGCGGATCGCCCGGGCCGGCAATGCCGACTACCGAGAGCTGCATCAGCTGGGCCGCGACTCCCTTCACCTTGCGTTCCGCCTGTTCCGGCGTCAGCACTTCACTGACCACGCCCGGCCTGCTCTCATTGACACAGTCGAACTTGCGGTTGCAGTAGTTGCACTGGATGTTGCAGGCGGGCGCAACCGGGATGTGCATTCTGGCATAGAACCGGTGAGCTTCCTCGCTGTAGCAAGGGTGGCGGCTGATCTCCTCCTCTGCTTCATTTGATATACACGACGGCTGCATCATTTCCCACCTCCTAAAAGTTTTGCGAGCATTTGCATCCTTGATTTCGCTTCGAGC # Right flank : CGGTTTACGGAGCTTAACTTCCTTGTGTTACCTCCATGACAGACTGTACGGCAGTGGCAGAAACGGCGGTAAGCTATGCGTTACTTCACCTGACACAACCCTTCGCTTGGCCGCTTGAATTACTCTCATCATATTTTTCCAGCCCCTTACCGTCAATTACATACAAGCTGAAAAAGCCCTTGTTTTCCTTATGTTTGCAGTATCGACAAAAGACATGTCATATTAATTAACTCATACTTATCATGTTTCCGTTTCCATTCTCTCTATTTTTGCAGTTGATATTTGTTCTCAGGACCATTGACAATCCTCCGGAGCTCATATATGATACCTTTAGGTTAATCACATGACTAAAACGAACGTTCTAAACTTCATATATCCCGTAAAGGGGAGTAGCTGCGTAAACAGAAACATCCTGCCGGATTCACCGTGAGACCGTGCCCGTTTCTGTGGATAATATAAGACAGTTCCAAGCCAGAAGCTGTAACTGCTTATATTTCAGA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAACTCGCTTCGGAAGCATTCGCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 82140-84341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCC010000043.1 Paenibacillus typhae strain I2-R2 I2-R2_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 82140 33 100.0 39 ................................. GATTATCGGAAGTCAACCCGACAAAAGGCAGGGTCTATC 82212 33 100.0 34 ................................. TATAGTATCAAGTAAAGGTAGAAACACGTTTGAA 82279 33 100.0 34 ................................. ATAAGCGTAAGCTGTTGCACTCCCGCTCTGATAA 82346 33 100.0 35 ................................. GTCCGCTCCGGCCGTGCCCACTTGCTTTCCGTTTA 82414 33 100.0 35 ................................. TCCGGTATGTAAACCTTAACTCGCTGTTTCATCGA 82482 33 100.0 34 ................................. GACGCTTCCATTTCCTTCTGCAGCTTGTCAATTG 82549 33 100.0 35 ................................. TGGAGGACAAGCCTTTGCTGCTACTGGTGGAACGA 82617 33 100.0 34 ................................. ACTAAGCTGCGGGGCCATGCTGATCATATTGAAC 82684 33 100.0 33 ................................. CTTCCAGTAGGGCTACGGAATTTCATAGATTCG 82750 33 100.0 34 ................................. AAAGTCGTCATGGCGAAGTATCCGATCAAAGGTG 82817 33 100.0 34 ................................. CGGTGTAGATAATGTGGTACGTTTCGTGATGGAA 82884 33 100.0 34 ................................. ATGCTTGGACTTATAAAAAGAAGGAAGCGAGTTT 82951 33 100.0 35 ................................. TGGACGGAAATCTGCAGCTGCAGCAATGGGACGGC 83019 33 100.0 33 ................................. CTGGCCGTAGGCAAGCTGCTAGTTGCTTTTATC 83085 33 100.0 35 ................................. GATAACCCGGATGAAGAATCCCGGCGGTGCTACCC 83153 33 100.0 34 ................................. TGGATAAATACTCAATATATAAGCGTTATTGGTT 83220 33 97.0 35 .....................A........... GCGTCAGAGACGCTACAGGGCGCTTTCTGGTGCTC 83288 33 100.0 34 ................................. TAGTAGATTTGGAGTGAACATCATGGCAGGCATC 83355 33 100.0 35 ................................. TGGGAAACGTTTATCGGTGATGCACAGAAGCTTAG 83423 33 100.0 34 ................................. AAGGGTATGGATCAAAAACAAAGGTCACAGAACA 83490 33 100.0 35 ................................. TTCCGCGTAATGGTACAGGCCAGTTGGTAGGCCGT 83558 33 100.0 34 ................................. AAAGTGCCGGATCTCTTCCGTAGAGTGAAAAAAG 83625 33 100.0 35 ................................. TGGATAGTTCAGTGTGGCATAAGCTCCCCCAGATT 83693 33 100.0 37 ................................. CACCGGGATTATCAGCATTGAGGCTAACCGCGTTGAC 83763 33 100.0 35 ................................. AGTAACTGGAAATATCATCGAACGGGTGATACCGG 83831 33 100.0 36 ................................. AATACGCACCGAAGGAAACGCAGAATTATATCAAGA 83900 33 97.0 34 ....................T............ GTTCGTGTGCCAGGCGTCAACATATTCGTATTCT 83967 33 100.0 35 ................................. CGGTCTGCACCGGACTATATCGGGCGCTCAATGCC 84035 33 100.0 36 ................................. AAGTTGGTGAGTTCGGTTATTGCATGCAGCAATCTT 84104 33 100.0 35 ................................. TCCCAGTTGATTGTTCGGATCTCTGCTCTGATTTT 84172 33 100.0 36 ................................. GGTTTGATTGTCATTCTGTGGCTCGCGTACGACAGC 84241 32 97.0 36 ..............-.................. CGGTAAGGTCAACCGGGTCAGAAGATGAAGAACTTC 84309 33 97.0 0 ........................A........ | ========== ====== ====== ====== ================================= ======================================= ================== 33 33 99.6 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : ACCGCTATCATTATATCCTCCTTCCTTGGCCCCTACGGGCTGCTCACGATGCTTGCCGTAGGTTTTGGTTTTCTGTTCAGCATTCACGCCCGGATCAGGGAGGTGCAGAGCGACCTAAAGCAGATTAAGCAGCATCTGGGGATTGCAGAGGCAAAAAAAGCAGCGGTGAGTAATGAAGAGATTGAGGCGGAGCTGGAGCGGGAGATGGTGGTAGCTAGAGAGTGATATTTTAATATGGGACTGAAATAAGTGCGTGCTCTCCGTGGATAAGAAATTGGAGGGTGCGCATTTTTTGCAGATTAGGAAAAAGAGGAATGGTGGTGCGAATAGGAAGCTCCCATGAATTACCCGGATCATTCGCACCTCAGATTTTGTCGAGTTCGAATAAAAATGAGAGATAGTTAAAAAAGTCAATAATGTATCAATATTTGTGTGATATGATTTTACAAGGAAAGCTGTTAATTAATGCTTGTGCTGTATAGGTTATAGAGCTTTTCACT # Right flank : TCCGCGATTCGGGATCATTCCGGATATGCTGCTTTCGGCGCGCTCTGTACAGAGTATGTATATAAGAATAAGAAGCCCTCTTGTTCTTCTTAAAGTATTTCAGGCTTGTACTACTCTTCTCCGAAAATACTTTCTCCTAAAAGAGGAAAAATAAACCTATATGTCGAAATTGTAAAATATAAGTCGGATTTCCTAATTTGTCATGGGATTTCGCTCTTTATTATCCTGAGAACAGGGAGAACAAGAACTTATGACCTATATTGCGCATATTCGGCAAAGCGATGGTGCAATTCAATCTGTGCCTGAGCATCTTCATGGTGTGAGTATAGCTAGTGGTCAGGCAGGCGCGAAGTTAGGAGTGGAAAATTTAGCCGCTTTGACTGGTTTACTGCATGACATAGGTAAATTCACAGATGAATTTTATAACTATATCAAACAAGCTGCCGCCAACCCAGGTAAGCCCCCGCGTAAGGGCTCGGTGGATCATTCGACTGCCGGAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 92868-95465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLCC010000043.1 Paenibacillus typhae strain I2-R2 I2-R2_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 92868 34 97.1 34 .................................C TGGAAGGCATACCGGCACATCTGCAGCCGTTGCT 92936 34 97.1 36 .................................C GTTGCTTCAAAGCCTTGTCCAATGTCAGGACGACAT 93006 34 100.0 33 .................................. TTCATCCATTATTATCACTCCTTTTTGATTAAT 93073 34 97.1 33 .................................C AAAAAATGACTGAAAAATTAACGCTGGCAGACC 93140 34 97.1 33 .................................G ACGATGCAAACGGAAACGAGCTGGCCGGATCGT 93207 34 97.1 32 .................................C GTTAAGGGGCGCTTATTATTTTGACTGCTATG 93273 34 100.0 35 .................................. GCTCATTTCATGAGACAAAATCAGAACAGAAACCG 93342 34 97.1 35 .................................C CGTACGCACCTTAACGGTCGCGCCCGGCTCGACTA 93411 34 100.0 33 .................................. TCGAGTGTTAATACTTTCCCCATGTTGTTACCT 93478 34 100.0 34 .................................. ACGAAAGAAGCGTCTAAACCAACAATGGCTAAGC 93546 34 97.1 32 .................................A ACGGCAGCCGAGTGGATTGTTTTATTGGGATC 93612 34 97.1 32 .................................G AATGGAGATTTGTACGTTTCCACTCCATTCAT 93678 34 97.1 32 .................................C CGCAGGTGTCCCGGCTTATCGCTGCTTTGATG 93744 34 100.0 32 .................................. GGATGGGTGGGATTACAGATAGACTTTTCCCC 93810 34 97.1 34 .................................C TCCGGGTCTTCCGGGTCACCAGTACCCGGATTCG 93878 34 97.1 32 .................................C CCTGTGCTATAACATTCGGATGATATGGGTTT 93944 34 100.0 33 .................................. GGAAGGAATCGGAATGGTAGCCTCTACGTTGAA 94011 34 97.1 34 .................................C CATCCCATAGCTTTACAATATGCAGTTGTTCTTT 94079 34 100.0 35 .................................. ATCACAAACATGTCTGGCAGTTCTGTGAGCTGCGT 94148 34 100.0 33 .................................. GATATTATTGATGAACTTATATCACGGATGCCT 94215 34 97.1 35 .................................G GATTCGCCCGTTGGGACTGCACATATGTTGACTGG 94284 34 97.1 35 .................................A TACAGACGATGGTTCTTATATTGCATTAACGACCC 94353 34 100.0 32 .................................. GGTTCGATGCTCAGGACTGGGAAGAACATAAC 94419 34 97.1 32 .................................G TAGCCATATAAGTGACAAATACGTGAAATGTC 94485 34 100.0 34 .................................. TCTGGATCATGTTCATACGGTGTTCGATGCCTTC 94553 34 94.1 33 ...................A.............C CCATGTCGCCCGCCACTTCGCATTCATAACGGA 94620 34 91.2 35 .........CT......................A ACGTAATTGGGCTGGCCTTCCCATTTGTCATAGGC 94689 34 94.1 33 .........CT....................... TAACTATCGGTGGATCTGAACAAAACCTAATGT 94756 34 97.1 34 .........C........................ CTGCCTGCAGAAATAATACATGGGCTGCATTAAC 94824 34 91.2 35 .........C..........G............A AAGAAAAAGGCGACTACAAACCCTACCCGTTTAAA 94893 34 94.1 32 .........C.......................G ATCCAGAGGCCATGGTCACCCAACACCAGGAA 94959 34 88.2 33 T........CT......................G ATCCAGAGGCCATAGGTCACCCAACACCTGAAA 95026 34 88.2 34 .........CT.A....T................ GGTTATGTCCCTTGTCATACCAAATTCTTCTTGA 95094 34 85.3 35 .........CT..A..C................C TGGAGCTAGCGAAGATAGCGAATGCCCGGGGGACA 95163 34 88.2 32 .........C...........A...G.......A TATTAGCAGATTTGCACGCTGCCAAGACTGTC 95229 34 91.2 34 ....................A.......T....G ATGCAATGAACAAAATTGCTTGAAGAGATGACGC 95297 33 85.3 34 ..A......C....-.....T............A CCATCTCGAAGTTTTGAAGGCGGGACTCGATCAC 95364 34 82.4 34 ........TC..A....A..T............A GTGTGCTGTGGATGCTGGCAGCGGCTATGGCTTC 95432 34 97.1 0 .........C........................ | ========== ====== ====== ====== ================================== ==================================== ================== 39 34 95.5 34 GTCGCACTCTGTGTGGAGTGCGTGGATTGAAATT # Left flank : AAGTAGGTGAGCGTGGTTGCTCGTGTTGATTACTTATGATGTAAGTACGAAGACCAAAGAAGGTAGAAGACGTCTATCCCAGGTATCAAAGAAGTGCGTGGATTACGGGCAGCGGGTGCAAAATTCTGTATTTGAATGTATCGTGGACGCTACAGAGTTTCGTAAATTGAAATACGAGTTGGAAGAGTTGATTGACGAGACTACCGACAGCCTTCGTTTTTATAATTTAGGTGAAAAGCATAAAACCAAGGTAGAGCATATCGGAGCAAAAGGTTCCTTTGATATAGATGGGCCACTGATTTTGTAAATTAACTGATTGGTGCGAATGCCAAGCTCCCATAATTTTTCCGGGAGATTCGCACCTAGAAATTTGTCGTTAGACGTCGAACTTCTATAGTTGTAAAAGTTGTCAAGATCTTAACAATAGCTATAATTAATTGAAAGTCGTGAAAAGTTGCTTTATTCATATTTAATTGAGAATAGAATGGTGACTTTTCGCT # Right flank : TCTGCCCACTTATAAGTAAAGTGCTGGGCTGCACCCCATAAAAAGCGATAAAAAATCTACTCCCCAGCCTTCCTCCGCGCCCGGAACCGCCGCACCTTCATGAGATTTCCGCACAATTTATCATCGCAATACCGCTTGGAGCGGTTGCGTGTATCATCATAGTAGACCCAGAGACAGTCGGGGTTGTCGCAGATGCGGATGCGGGAAAGCTCCTTCTCCAGTACAGCTTCGGTAAAAGAGGCGGCGATTTCGGCCATGATCTGTCCCCAATCGCTGCGCTGCGGCAAGAGGGCAAGCTCTGGAGGCTTGTCCGGATTGCGGATGATTTGCCGGATAACCGGACCTGCCGCCATATAGCTGTTGAGCTGCTCAAGCAGTGCCTGATCCGGAGCAGCTCCCCGCACGAACTGCTGGACCGCCGCCCACAGCAAGCTGCGCAGCTCCTTGAGCTCACGCAATTCCTCACGGGTTGCCGGTGCAGCTGCAGGCAGCCCGTGCTG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGGAGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //