Array 1 1604-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRM01000204.1 Methylobacterium indicum strain NS229 contig_204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1603 29 100.0 32 ............................. TCGACCATCGCCTCGAGGTGATCGCCGACGAT 1542 29 100.0 32 ............................. AAGCGTCAGCGTCGTGTTGACGTTGACGATCG 1481 29 100.0 32 ............................. TTGCCCGAGTTGATGACCGAGCCCGCCTCGAT 1420 29 100.0 32 ............................. CGGTACGTCGGCAATGGCGATCAACAGGTGTC 1359 29 100.0 32 ............................. AAGACTATGCCGCCGGCTCAGGATGCCGCGCC 1298 29 100.0 32 ............................. AAAGCACCGTGCTCGCCCGCGCCAAGTCGGCG 1237 29 100.0 32 ............................. AGGATGGCCGCAGCCACGTCGGGGTGCATCGC 1176 29 100.0 32 ............................. ATTCTGATGCGCCGCTTTTCCCGCCGCCTCGC 1115 29 100.0 32 ............................. CGGAGAACAGCCATGAACGCCCAGACCGCCGC 1054 29 100.0 32 ............................. TCAGGGCCGCCACAGCCGCGTCGTTCGCCGCC 993 29 100.0 32 ............................. GGGCATCGCTCCGGCCGCCTCGTAGAGCACTC 932 29 100.0 32 ............................. CGCCAGATGATCGGGGTAGACGGACCGCTGGA 871 29 100.0 32 ............................. TCCGGTAATTTAGGCGAGAGGGGGACGGGCGG 810 29 100.0 32 ............................. TTGTCCGAGGACGAATTTCGGGCGCTAAGCAG 749 29 96.6 32 ............................T CGTGCGCTTCGCTTGCGTGGGCGATCCGGCCC 688 29 100.0 32 ............................. TACTGCCAGATGAGCGTCGGCAGCGGCGGCCT 627 29 100.0 32 ............................. CGCGAGGCCGGCGCCTCCCCGGGCTGGGCCGC 566 29 100.0 32 ............................. ATGCCGGCCAACCCGGTCATGCGGTTCTGCAC 505 29 100.0 32 ............................. GTCACGACCTTCTCCTGGACCGAGGAGTTCGA 444 29 100.0 32 ............................. GCCTCTACACGGGGCATCCCCGGCCCCTCACC 383 29 100.0 32 ............................. ATGACGGAGGACGCCCAGTCGGCCCTCACGAT 322 29 96.6 32 ............................T TCCGTGACGGCCGGCAAGGTGGACGCGGGCGC 261 29 100.0 32 ............................. TCGCTCGCAAGCGTCGTGACCGGACGCTCTCG 200 29 96.6 32 ............................G TGATTTCCGACCCGGAGTGAGGCGCACCAGTC 139 29 96.6 32 .........................G... GCGCGCCTCGCCGCCTGGGATGGCGTGCTGGC 78 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GGCTCCCCCGCATCCGCGGGGATCGACCC # Left flank : GC # Right flank : CAACCTCCCGAGCCGCGAAGACGTGCTCCGGCAGGCTCCCCCGCATCCGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATCCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 19847-20057 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRM01000049.1 Methylobacterium indicum strain NS229 contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19847 28 100.0 33 ............................ TCAATACATGGCCTCGATCGGCCTGACCACGCA 19908 28 100.0 33 ............................ CTCGACCATCGCCTCGAGGTGATCGCCGACGAT 19969 28 100.0 33 ............................ CAAGCGTCAGCGTCGTGTTGACGTTGACGATCG 20030 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GGCTCCCCCGCATCCGCGGGGATCGACC # Left flank : ATCCCGGGTCTGATCGACGCGATCAAGTCCGTCCTGGTGCCTCGGGAGCGGGACGACGCCCCCCAGGCGGAGGTCGGTTCGACGACCGACCCCGAGCCGACGTGAACGCGACGAGGAGAGGGGCATGCCGCTCTGCGTGGTCGTCACCCGCGATGTCGAGGATCGCTACCGGGGCTTCCTGGGATCCGCCATGCTGGAGCTGGCCCCCGGTGTCTACGCCTACCCGCGCATGAGCGCGGGCGTGCGCGATCGTGTCTGGACCGTGCTGTCGGACTGGTACGGCCAGCTCGGCCGTGGCAGCATCGTGATGACCTGGGCGGACACGTCTGCGGCAGGCGCGCTCGGCGTTCGCACGCTCGGCTCGCCGCCCAAGGAGGTGATCGCCCATGAGGGCGTCCTTCTCACCCGCCGTCCGCTGGGCCGCGGAGCGGGGATACCGCCCCTGGCCCAGGAGACGAGCTCTTTGATAAGTGAATGATGTCAGTATATTGACTGGCAGA # Right flank : CTTGCCCGAGTTGATGACCGAGCCCGCCTCGATGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATCCGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 9377-10141 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRM01000058.1 Methylobacterium indicum strain NS229 contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9377 29 100.0 32 ............................. CTTGCTCGCGGTCGATAGGGAGTAGGGCGACG 9438 29 100.0 32 ............................. CGGATCGTCGCCGGGTCGATCACCACCGACCG 9499 29 100.0 32 ............................. CAGTTCGTCAGCTCGGTCGCCGTCAGCACCAC 9560 29 100.0 32 ............................. TCCTTCACCGCCTCGCCGATCTTCTCGCGCAT 9621 29 100.0 32 ............................. GGCGTATCAGTGGCAGACCGGTATCGACTGCC 9682 29 100.0 33 ............................. AGGGGTACGCACGACTACGCAGCGGCTAACACG 9744 29 96.6 32 ............................G TCTTCGAGATCCTGGACCCCGAGCGGCTGGCG 9805 29 96.6 32 ............................T TTCGCGCAGAACGCCGACATGTCGTCGGGCAC 9866 29 100.0 32 ............................. CCGGGCAAGGCTGTGGTGCAGGGCGCGCACGC 9927 29 100.0 32 ............................. TTCGGGATGAACCAAGTCGGCGACCCATCGCT 9988 29 96.6 32 ..............G.............. GATCACTGCGGCAGAGGCTCAAGCAATCTGTC 10049 29 96.6 32 .............C............... GCGACCTTCACCAGGATCAACACGCAGCTCGG 10110 29 79.3 0 A.T........C.C...........T..G | G,AT [10122,10134] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GGCTCCCCCGCACTCGCGGGGATCGACCC # Left flank : CCGCATCGAGGCCCTGCCACCACACCGGCCGGCGGCGGGGAAAGCCCTTCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCGGCGTAGAGGTCGTCGCGGTGTCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCTCTCGGCGAAACTGCGGTAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTGAGATCGGTCAGGGCCTTCACGGGCATGCTCCACTCTGGAATGGCTCCAATCTAGAGATTGGAGCCATTCCAAACAAGGGCTTGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCGCGGACGATGGCCCTCGACGACCGGGCCGGTCTCGGGCATGCTGACACGCCGCCGGTCGCAGATCTTCCCCAACGGCATCTTTGACATCGTGAACGGTATCAGCGATTTAGCTGGTAGA # Right flank : GCCCTGGCATGCGTGCGCTGCCGCACGCCGCTGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCCCTTGCGTCCCGCGGGTGCGAGGCCGCGCGGGAGGCTTGTCCCGCGCTCCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAGAGCCTCGGCTACCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGCGCCTACGACTGGCTCACGCCGCTGCGGCCCTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGCTCGGTCGACGGCGGGGTGAACACCGCCGTCCTGGAGCGGATGGGCGTGCGGGTCATCCGCGGCTCGGGCGCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACTCGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //