Array 1 73-768 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000025.1 Siminovitchia fortis strain DE0025 NODE_25_length_54441_cov_30.121717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 139 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 205 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 271 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 337 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 403 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 469 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 535 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 601 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 667 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 733 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.5 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : GTTTCCTAAACCTAATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAATC # Right flank : CGATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 116-3054 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000067.1 Siminovitchia fortis strain DE0025 NODE_67_length_18106_cov_29.661989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 182 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 248 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 314 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 380 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 446 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 512 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 578 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 644 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 710 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 776 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 842 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 908 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 974 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 1040 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 1106 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 1172 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 1238 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 1304 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 1370 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 1436 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 1502 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 1568 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 1634 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 1700 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 1766 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 1832 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 1898 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 1964 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 2030 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 2096 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 2162 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 2228 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 2294 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 2360 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 2426 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 2492 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 2558 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 2624 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 2690 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 2756 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 2822 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 2888 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 2954 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 3019 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATTAG # Right flank : TACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 14539-13170 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000069.1 Siminovitchia fortis strain DE0025 NODE_69_length_14646_cov_31.324525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 14538 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 14472 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 14407 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 14341 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 14273 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 14208 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 14141 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 14074 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 14006 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 13939 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 13872 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 13806 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 13740 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 13673 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 13606 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 13539 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 13471 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 13404 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 13334 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 13267 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 13201 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CAAACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2589-88 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000078.1 Siminovitchia fortis strain DE0025 NODE_78_length_8755_cov_32.037912, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2588 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 2523 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 2456 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 2389 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 2322 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 2255 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 2188 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 2120 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 2049 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 1981 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 1914 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 1846 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 1780 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 1714 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 1647 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 1581 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 1515 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 1448 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 1382 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 1317 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 1250 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 1184 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 1118 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 1050 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 983 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 915 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 848 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 782 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 714 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 648 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 583 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 517 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 451 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 385 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 318 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 251 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 185 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 119 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TTCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000130.1 Siminovitchia fortis strain DE0025 NODE_130_length_1019_cov_28.500000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 184 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 250 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 316 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 382 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 448 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 514 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 580 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 646 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 712 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 778 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 844 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 910 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AGGGAAGTACAGAAATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 118-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMR01000145.1 Siminovitchia fortis strain DE0025 NODE_145_length_689_cov_27.601307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 118 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 184 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 250 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 316 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 383 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 449 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 515 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 581 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTTAGTACCCAGATTTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAATAGTGTGCCGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //