Array 1 191119-192304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODD01000083.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4157_R1 NODE_4_length_318485_cov_0.820369_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191119 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 191180 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 191241 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 191302 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 191363 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 191424 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 191485 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 191546 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 191607 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 191668 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 191729 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 191790 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 191851 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 191912 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 191973 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 192034 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 192095 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 192156 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 192217 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 192277 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208974-210589 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODD01000083.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4157_R1 NODE_4_length_318485_cov_0.820369_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208974 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 209035 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 209096 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 209157 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 209218 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 209279 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 209340 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 209401 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 209462 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 209523 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 209584 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 209645 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 209706 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 209767 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 209828 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 209889 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 209950 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 210011 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 210072 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 210133 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 210194 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 210255 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 210316 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 210377 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 210438 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 210499 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 210560 29 100.0 0 ............................. | A [210587] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //