Array 1 2037669-2037968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024120.1 Bacillus cytotoxicus strain CH_1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2037669 36 100.0 30 .................................... CCACCTTTGAAACGCGTCTGGATCAACGAG 2037735 36 100.0 30 .................................... TAAACCACTTATGGAATCTGTAACAATAAC 2037801 36 100.0 30 .................................... TAGCCAAATTTCAATGTCATCGGAAATAAT 2037867 36 100.0 30 .................................... AAAGACGCGATTGATTTTGCTGAGTATAAA 2037933 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Left flank : AGTCCGGTAATCGTGGAGGAGAGAGAAGATTCCCCCTCGACCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGTTCAATTAAGTCTGACGAATCATTGAATATCTATTACTCAAACTTTTAAGACCTAGATATCCCCAGTAGGAATTGTCTAGGCTTCTTTTCGTATGCTGTCTGTTTGGCGATACTCAAAAATTGGAGTTTCTTTCTCCTTACCCTTGATAATTTTTATTGTTTCCATATAACCATTCGGAGCCTTCTTCGAATCCACTTGTCTCGTTCTTTACATATGGACGGCGTGTCGCTTAATGCATTATATCCACACCATCCAATTAGATATTTGTAGATGGTCAACCAAATTTGCCCCACCTTTGTCACCGAAAACTGACCCACCTACTCTTCCTTCGTGACTAATCGTACTTTCATTCTGTAGCTATTTCCGTTAATATTAAAAATATGACAGTACTGAACAAATATTTATTATATGCATTTTTAA # Right flank : TACATGCACCGAAACCTCTTGATATTCCTCAGTTTCAAGGGGTTTCTTTTTTAAAAAAACGAGTTTAAAAATGCTCTTTTGGTTATTTTCGTGCTAAATTTTTTTCATATTACGTCAAAACAAAAAACACTTGCTAAAATTGCAAGTGTTTTTTGTTAGAAAAAGTCCGTTTTATTTGTTCCTAATTTTTCATCAATGGTTTGAACACCAAGTAAAATATCCATACTTTCAAATTGCTTTTCTGTTACTTTTAATGAACGGATTGCTCCATTTACATTTGGAATGTTTTGTCTAAGTCTTCTCAAATGTTTTTGAGCACCTTCTTCTCCATTACAAACTCTTGTGTACACAGAAAATTGCAGCATTGTGTAACCATCTTTTAATAAAAATTTTCGGAAACGGGTGTAGGCTTTTCTTTCAGCTTTTGTCATCACCGGCAAATCAAAGAAAACAAGTATTCTCATAAATTTACTCATACGTATGTTGCCGTAATGCAATCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCTCTTTAAATCTTGGTATGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 2156568-2156015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024120.1 Bacillus cytotoxicus strain CH_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2156567 29 100.0 39 ............................. TTATTTCTTTTTTTGTTGTATCTATTTTTAGCGAATCAA 2156499 29 100.0 35 ............................. CCATCTTCATAGTTACCAGTTGTTGTGATAACAAC 2156435 29 100.0 37 ............................. GTCAAACAACGCAAATTATTGACTCTATTGCGGGCAA 2156369 29 100.0 37 ............................. AATAGATGTATGTAGGTATTGGTTGGAACAGAACGGG 2156303 29 100.0 36 ............................. AAACGCTCTAGTGGATGACCAAAAGGTGGCAGAAGA 2156238 29 100.0 35 ............................. ATTCGGAACCAATACGACGTTCTGTGCGAACGCTA 2156174 29 100.0 36 ............................. GTTATTTTTTGATAGTCTTCAGCACATACCATTCGC 2156109 29 100.0 37 ............................. ACAGCAAAAATTATGATTCACAATGCTTCTATGTGGA 2156043 29 93.1 0 ....................A...G.... | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 99.2 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TGGTGGTAAAAAAATGTTTGTTATAATTACTTATGATATTGGAGAAAAAAGAGTAGGAAAAGCGTGCAAGAAATTAAAACAGTATTTAACTTGGACGCAAAACTCTGTTTTTGAAGGAGAATTATCTAGGACACAACTCTTAAAATGCTTAGCTGAATTAGATCAGATTATAATATCGAGTGAGGATTCTATTTACTTATATGAAGTAAATAATCCACGTAATATAAAGAAAAAGGTATTTGGTATTGAGAAAAGTTACGAAGAGCTATTTCTCTAAACACGATTTTATAATATATTAGGAGTAGTTTTTTTCTTATTAGTGAGAAGTTTGCAGTGCATCGTTTTTTAGCGAGTAAACTGCCAACCTCTTGTCTGTTAAAGGATGGAGCGTATTTTTGAAAATACTTTTGAAACACGACTCAACATCCGCTGCAAGATTTGGAAGTCTTAATGTAATGTGTTCCTTGATTTAAAAGGGATTATAGTGTTTTTTTATAGGG # Right flank : GCAGTTTTCTTATGGTTAAATAACCCATGGAAACAAAATTAGTCGCCATTTATGCTTATCTGAGCGGTATAGAACCTTTTAAAATAGTGGCTAGTTTTTTAGAAAAGAAAGAAGTTATCGTGAACGAAACTAGCTCCTTACCCGTAATTTCGTAGGTTAATTTGGTTACACTGAATAACTATAAAAAACAAACCAAATCAGAGCTACATTACGAAAGGAGCTAGTTTATTATGAAGGATACCACAAAATACGTAGGTTTAGACGTTTCAAAGGAAAAAATTGCTGTTGCTATCGCGGATGAAGGAAGAGAAGAACCTAGATATTTAGGAATGATCCCTCATACACCTGAATCTCTAAGAAAGCTGATAAAAAATTAGGTGCCGTTGAACACCTAAAAGCATGCTATGAGGCTGGTTCAACTGGCTATGGGATTTACCGCTTACTTTTCAGCTTAGGAGTAGATTGCGCAGTGATAGCTCCCTAAAAACCTGGAAATCGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2166651-2165896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024120.1 Bacillus cytotoxicus strain CH_1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2166650 29 100.0 37 ............................. AAAGTCGAATCGTTGTGGGTAGACTGTCCACGACTTG 2166584 29 100.0 37 ............................. ATTTTTCGCGAGTTTATTTCACACTTTGAGAAAATAA 2166518 29 100.0 38 ............................. TTGACACATTACAAAACACCATTCCAATCTCGGATTCA 2166451 29 100.0 39 ............................. TCATTGCTGATGAAAATGATACGTGACAGGTTTGTGGTA 2166383 29 100.0 37 ............................. AAAGTCGTATCGTGGTTGGTAGACTGTCCACGACTTG 2166317 29 100.0 37 ............................. CGTCTTGCAGAAGTTAATCCAAGTAAATAATCAACGG 2166251 29 100.0 35 ............................. GCGGTGAACTTGTCCAATTCGGAACCAATGCGACG 2166187 29 100.0 37 ............................. AGCGTTACCTCTTTACCAGTTTCACGACCACGCTTTT 2166121 29 100.0 36 ............................. TCGGATTTTATAGATTTATTTTTGTTTAATGAGTAC 2166056 29 100.0 36 ............................. GTAATTAGCGCAGGCGGAAAAGAATTTGATGAATTA 2165991 29 96.6 36 ............................T CCAATGTATTCAATGGTTTTTGGACATTGTTAGAAA 2165926 28 93.1 0 ....................-.......A | AGA [2165900] ========== ====== ====== ====== ============================= ======================================= ================== 12 29 99.1 37 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : CGTTCTTGTGAAAAAGGTAAGAAGAGGAGACGAAGAAGTCGTTATTATGATTCGTTGGGAATCTGAAGAAGCATGGAAAAATTGGGAGACAAGCGAAGAACATTTGGCTGGTCATCGTGCAAATCGCGGAAAACCAAAGCCAGAACATATTTTAAATGCTGAACATGCTGTTTATTATGTGAAAGCAACGAAATCGGCTTATCAGCAATCATAATGTGGATGAAAAGGGGGCGATTTAGCCCTTTTTTTAATGATTAAAGAATTCTTTTCTTAAATGTAGTTTTGTATTATATTAGAAAATAAGAGTGTACCTATACCAATACTCATTTTGCAGCATATCAATTTTTGAAAGAAAGGAGTCAAAACCCTTATGTTTCAAGGGATAGACTTTATTTTTGAAAATGCATATGAAACAAAACTAACAGTGTGCTGCAAAACTTTCAGTGTATTATATAATAAATGTATTGATTTTAAAGAGAATTATGGTGATTTTTTATAGG # Right flank : AACTTCAGATGATAATAGTCCTTCTAGGGCATAGCTATCAACTTTAGAGAAGTGCTTCCCCTAAAAAAAGTATCGGGACACTTTTTTGTAATCTTTGAATGCAATCCTGGATTTTGGGTATATTCAAATAGAACTTCCTATGATATATATTTTATGGCGCTATTTGAAGCCGATTCGCTGATTTTTCTATGTTTTGTTTACTGATAGCTTGAAAGAGGTTGCTAAGTACAAAAAAGTTGCGGTGTATATTTTTTTGATAGATTTGCACCATATAAGCATATTTCAACTTACTCATTTTTTCCTTGTGTCTCTCATAAAGGTCTTTGTAGTTGATAGGTGTAACGCTTGCAAATAAACATAAACGCAAGGAGTATAAATTTATTTTAAATAGAAGTTCTATTTGCTGTCGTAATGAATAAAAAGCATACACTTCTGTGAGAGGATACTGAAAAATGGTGGTTTTGAAAAATAACACGCATTTTATCGAAATGTTAAGGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //