Array 1 198837-197099 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPS01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_32_126 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198836 29 100.0 32 ............................. TGTACAGTGTCAGTTATTACCTGACACATGTC 198775 29 100.0 32 ............................. CTGCATAATTGGCCTGGCAAGGTCAGTGAAAG 198714 29 100.0 32 ............................. TAAGAGGCGGTATCATTTTTGTCTTCGGGCGG 198653 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 198592 29 100.0 32 ............................. GCCGTTGATAAAAAAACGGGCGAACTGGACAA 198531 29 100.0 32 ............................. AAGAACGTTTGCAACTCCCTGGTGAAGCGGTG 198470 29 100.0 32 ............................. TTTTTTGCGTCCCTGCCTCCGGATGAACAGGA 198409 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 198348 29 100.0 32 ............................. GCGATGCTCAGGATTCAGAATCTGAACGTCCA 198287 29 100.0 32 ............................. ACGCTGAACCTGAAAAGCACGTTGCCGGGCGA 198226 29 100.0 32 ............................. GATGGACACCACAACTACGCGGCGGCAAAACT 198165 29 100.0 32 ............................. ATCGGGGAGGTTGTGCAAGGGATTTTATCGTG 198104 29 100.0 32 ............................. TCAGCAAAAAAGACCTGTTTGCCGATATGGGG 198043 29 100.0 32 ............................. AACCGGAGGGGGTTCCTGCCGGGTACGCATAA 197982 29 100.0 32 ............................. CAGCCCCTCTAAAATTGTTGCCCGCCACGTAA 197921 29 100.0 32 ............................. AAAACCAGCGATAACGGGCGGGCGTTTATACG 197860 29 100.0 32 ............................. CGACGCCCGATTCCTGTTGCCAGCGCCCCGCA 197799 29 100.0 32 ............................. GCCGCTATCACCAACGACCCGGGCGTTGTTGG 197738 29 100.0 32 ............................. TTCCGTCGTGTAGCCCGCTGGTTTGGGTCGGA 197677 29 100.0 32 ............................. TTGTTATCCCGCCTGTGGTTTAATCGCGAGTG 197616 29 100.0 32 ............................. CCGGGTGCATCATGCAAAATCCTATAAGGAAA 197555 29 100.0 32 ............................. AATTGTCAGTGTAATTGCGCATATCGTTCGTT 197494 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 197433 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 197372 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 197311 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 197250 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 197189 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 197128 29 96.6 0 ............T................ | A [197101] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCTGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209809-208500 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPS01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_32_126 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209808 29 100.0 32 ............................. TCGTCCGAACGTACCCTGGCTGTCCAGGCCGC 209747 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 209686 29 100.0 32 ............................. CTCACCCGATTAAACAAGAGGAGCGCAGAAAC 209625 29 100.0 32 ............................. TTTATATCCAGTTTTCGGCAGAAGCGCCGCAA 209564 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 209503 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 209442 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 209381 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 209320 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 209259 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 209198 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 209137 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 209076 29 100.0 32 ............................. CAGCGCAGACTACTGGCGCTGACGGCTCGTAC 209015 29 100.0 32 ............................. CCTCCGGAAGAGCGGAATCCGACATAATTATT 208954 29 100.0 32 ............................. ACTCGCTTATGCATAGTGACAATTGGGCAACC 208893 29 100.0 32 ............................. TTGAAAGAGCAATTAGCGCCGCTGGCATCAAG 208832 29 100.0 32 ............................. GCGCCGCGCAGTTCGTGGACGCGAAACGGATT 208771 29 100.0 32 ............................. CTACACATGCACCGGGTATCCGTGAGCATGAT 208710 29 100.0 32 ............................. GCGGGCATGTAAATAGCAGGTCAGCAGATACG 208649 29 100.0 32 ............................. ACACAAATGCAGTTAGCTAATCGTGCATGGCG 208588 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 208527 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //