Array 1 6272-2913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHU010000011.1 Clostridium perfringens strain 1805-15 NODE_11_length_74862_cov_88.1949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6271 29 100.0 35 ............................. TAGTTTTGCCATACCCAGGAAGTCCGAAGAATCCA 6207 29 100.0 36 ............................. TTAAAAGTTATTCTACTTATTAATATGCAAAAAAAA 6142 29 100.0 36 ............................. ATGTTTGTAATATTCCCATTGATACTCCCATACTTA 6077 29 100.0 37 ............................. GCTTATGTCGGATCTCTAGCTGAAACTAGAGCATACG 6011 29 100.0 37 ............................. GAGCATTTAAAAGTTCTTGTTCAATCAATTTGTCAAG 5945 29 100.0 36 ............................. TATCAGTAATAAATTCACTATTACTTCCAAATAAAA 5880 29 100.0 36 ............................. ATATTTATTGATAATGCAGAAAGCGTAAATAAGATT 5815 29 100.0 36 ............................. ATAATTGCACAACTGGAGCAAGAATTAAATTATAAA 5750 29 100.0 37 ............................. AATGAAATTAAAATTGAAGCTCAAATAAGAGCTTTAG 5684 29 100.0 36 ............................. GTTGATGTAGCTCCTTCTTTAAGAATTGGAGATACA 5619 29 100.0 37 ............................. GCATTCATAGGGTCAGTTATTATATAATCTATAGTGC 5553 29 100.0 35 ............................. AACTTTATCTACTTCTACTTCTTCTGATAAAACAC 5489 29 100.0 36 ............................. TTTAGTATTTCAGCAGGTACTTTTATTTCTTTATGC 5424 29 100.0 36 ............................. TTATCTCCGCTCTTTGTTGTAGAGCAAACCAAACTT 5359 29 100.0 37 ............................. AGTACAAGTCTTTTCACCATCAAGGATGGCTCTTACC 5293 29 100.0 36 ............................. TAACTTCTATAAGTTTTAACTGTTCAAATAAATCAA 5228 29 100.0 37 ............................. TATTAAACCTCCAAATTATTTCTAATATGCATAAATC 5162 29 100.0 38 ............................. AGTTATTTTGAGGGTATAGAATCATTTGGACAACAAGA 5095 29 100.0 36 ............................. GATTTTAAAGAGTGGAATATTAGATGAAACTTGAGT 5030 29 100.0 36 ............................. TATTGCATAAATTTCCGGAGTATCATCAGCCTCTTG 4965 29 100.0 36 ............................. ATTGCATAGCAATATGATTTATTTTTTCTTCTTCAC 4900 29 100.0 36 ............................. TCTACTGGTTTACTATCAGCACCATCTACTGGCTTA 4835 29 100.0 36 ............................. ATGTGTAAATGGAGAATCTTCAAATTTAAAACCATA 4770 29 100.0 37 ............................. TTATTTCTTTATAGTTTTCTTTAACTCTTAATGGATT 4704 29 100.0 36 ............................. TTTCTTTCTATATATTTAACTGCTTCTTTCATATTT 4639 29 100.0 36 ............................. TCTAAAGAATATTGCCATCCCCTACAAGTAAAGTTA 4574 29 100.0 36 ............................. ATAGCTTTTTGTATGTACCTTATTATGTCTTTATTA 4509 29 100.0 36 ............................. TTAATAACTCTATCGGAATCGCTAGGTTTAAATAAG 4444 29 100.0 36 ............................. TTTGTACATTCTTGTACCATTACACTTCCTCTGTTT 4379 29 100.0 36 ............................. AAAGAACTCAAAATATTAACTACAATTGGAGCAAAC 4314 29 100.0 37 ............................. TCAAATGGTTTACTATCAGTACCATCAACTGGTTTAT 4248 29 100.0 36 ............................. AGTTTTAGCGTGCTCTTATGTTCAGTTACTTCTAAC 4183 29 100.0 36 ............................. GACCATATGAGTGTTGTAATAAATAAAGATGATGGA 4118 29 100.0 37 ............................. CATTATTATGACAGAAGAGAAGAAAACGGTGGTTTTG 4052 29 100.0 36 ............................. TTCATTAACTTATAATAGTTATGAACTAAATGCTCC 3987 29 100.0 36 ............................. TACTTAGAGAATGCTTTTTCAAGTACTATAGAGTAT 3922 29 100.0 36 ............................. TACTACAAACATAACCTTGCTTAGCACAACGTATTA 3857 29 100.0 36 ............................. ATCATAGTACCCATTATTCCAATTCCAATTGGAAGT 3792 29 100.0 36 ............................. TGAATTACTTCCTGGGAAAGTTTCAGTATAAATACC 3727 29 100.0 36 ............................. GCAACGTATTTCTTACGCCATTCCATGTAAATCTTA 3662 29 100.0 36 ............................. AAAGTTAAGGGTAACGATCATGGCATATGGAGAAGA 3597 29 100.0 36 ............................. GATACAAAGATAGTTCTAACATATCTAGAATTTATA 3532 29 100.0 36 ............................. GAGTTAGCAGAGATTTTAAGTGTAATTTTAAAAAGA 3467 29 100.0 37 ............................. ATGTATTGTGATGGTGTTACAAATGCAACTATTTTAA 3401 29 100.0 37 ............................. TTAAAGACATATGATCTAGACAATGAAATGGATGAAG 3335 29 100.0 37 ............................. CTTTCATAGTACTTTCCAACTTTATGCATATAATCCT 3269 29 100.0 37 ............................. GTAATAAAAACTTCCTTATTTTCAAAATTCATGAAAA 3203 29 96.6 37 .C........................... TACTCATTAAGGTAAGCCATTATAGCTATCTTATTTG 3137 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 3072 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 3007 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2941 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 52 29 99.3 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATAGATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //