Array 1 93214-93709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000022.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93214 29 100.0 11 ............................. GCCCTCCAGCT Deletion [93254] 93254 29 100.0 32 ............................. GAGACCGTGCTCGCCCAGCGCGCCATGAAAAT 93315 29 96.6 32 ............................A TCGTTGACGGCATCGGGACCATCACCGTCGTA 93376 29 96.6 32 ............................G CGCGTCTCGTCGCTCCGACGCTGACCGGCTAC 93437 29 96.6 32 ............................T CTCAGATTCACGCTTGACGGTTTACGGTAGTT 93498 29 100.0 32 ............................. AGCCCGGTGTGGGATTCGGTGTGGCAGGCCAA 93559 29 100.0 32 ............................. GCTGCCTGCACGCTGCCGCCGCCCTGCACCCG 93620 29 96.6 32 ............................G TGAGCAACGTGACCGTGACGCTCCAGGAGATC 93681 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 30 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : ATTGCCAGGGATGGGTAGGCCTGCGGGCGCCCGAGGGCGTCCGGAACTGTGCTTCGCCGCCGAACGGCAGGGAGTGGACAGCCCGCTCGGGTCGCCTGAGTGAGTGGTCGTGCGGACCGTTTCTTCGTGGTTCGAGGTACGAACGGGCGAGAACTCGCAGGTCAGATGGTGGTGCGAGGTGTGAGGGACGGCGGGGAGGGCGGAAACGGCAGTTGTTGTGGATGTTTCACCAGGTATGGCGCGATGTGGTGGCTGGCGGGAATTGCGGGCAGTTTCGTGCTGGTGAGCGGCGCGTGGTCGAGCGGTGCGGATGTCCTCGCCGTCGCGGGAGGGCGGCGGCAGGTCGTGGGGACGCCTGGTGGAGTCGTTAAGGGCCTGCTGGAGGGCTGTGGCGGGGGGACGGGATACTGTGGGCAGGGAGGATCTGTGGGATGCGGGAGACCGTCGGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGCCGCAGGTCAAGAAGT # Right flank : GTTGCACCTGTCTGGACCGCCCCGGTGGTGTTGGAGGCCGTGCCTCCCACGCTCGTGTGCGTTCAGACCGCTGTGGCCTGTCGCCAGTGTCGTTCCTCGTACTCCAACGGTGGCCTATTCCCACACCAACTATGCAGCCTGTGGTGATTGTACCAGTG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266557-266260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000003.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 266556 31 100.0 37 ............................... GCGCGGGCCTCCTCCTGCCGGGCCCACTCGGCACGCC 266488 31 100.0 36 ............................... CCCCGTCCACGTCGAGCAGGCGGGGCGCCGCCCACG 266421 31 100.0 33 ............................... CCTGGTACTCCAACGAGGCTGCTGGCGAGGATT 266357 31 100.0 36 ............................... CGCTGGACGCCTGCACGCACGACGGCATCCCCGCCG 266290 31 96.8 0 ............................G.. | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 99.4 36 GGTCCTCATCGCCCCTAAGAGGGGTCACAAC # Left flank : CCGACGACAGTCCCAGCTCTCCGGCTCCCCGACCCTTCCCTCCGCGACTTCCTTACGGCGCCCAGTGCAGGACGACCTTCCCGACCGGCAACCCGCCCGATACACCGACGGGGTTCCACCGCCTCCACGAGACGCCGTCCACCCGACCCGCTCCCCGCCGCATGCTGACCCTCGGCGCCTCCGCCTACCACTCGCACTCTCCGCGATACCGTGTCTCCGCACCGTGCACACCGACCATCTCAGGCCCACCGTTCGACCAGGCACCACAGCGCCCGGCACGTCTTCCTCCGCACGCGAGCCAGCTTTCGAGAAGGCCCCTACGACAGCGCGGAGAGACAACGGACCCCGCTGGGATGCCCCGACCACGGGCGAGGCGCAGCCGCAGGTCCGCGTACCATTTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAAAACAGCCACGAAAAACCGCTCGTGGACAGCCTCCCACCTGCGGCTTTACTCTCG # Right flank : GTGCCTCGGCGTGGAGGCGTCACCACGGGGTACCGCCCAGGCTCGCTGGCCCGCTGTCGACGACGATCAGCTTGTCACCCAGGAAGCCGTCCACGTCTGGGCCCAGCCACGACTCGCCTGGTCGAGCACGGTGGAACCTGAAGGTTCCGTTCGTGCTGTTCGCTCCCACGATGCAGCGCACCGCGACGGGCTCGGGCAGCGCACGGACAAGCCGCACGACCTCCAGGGCGAAGCCCAACCCGTGCCGCGACATCCGCACCTGGTCCGCCTCGCTGATCACCGGCTCGCCGTCCTCCAGGCATCCGACATCGACGGGAACCACGTCATCCAGGTGGATCTCGTTCGTCGCGCACTCCCATGCGGTCAGATCCTCGGTAGCGGCGTGGGGTGCGTGAGCACGGGTCGCGCGTCGGGCGAAGACCAGGGCCGGGCCGGCCCGCACGATGCCCTCGTCCAGCACCTCGCGCAGCTCGGGAGCCAACTCCGCCACTGGGGTCGCG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCGCCCCTAAGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 277848-277556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000003.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 277847 30 100.0 35 .............................. GCGAGGATCTTCGCCGTCTTTCGGTCGGTCATGTT 277782 30 100.0 35 .............................. TGGTGGGATCGTCTCGGGCTGCTGACGTCCACCCT 277717 30 100.0 37 .............................. AGGCCGTCGGCCGGCTGTCCGCAGACCGCGCAGGGGA 277650 30 100.0 35 .............................. GTGCGGGGGCTTCCTGCTGTGCGTGGCAGGTCAGA 277585 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Left flank : TCACCCGACCACTCCAACTGCTGGCCAAGGCGTTGTCCTTCACCGATCCCGTGACAGGTCGACCACGCCGTTTCGAAAGCCGCCTCACGCTCGGAGCCTGGGACGACTACGAAACCTGGTCCGGGGGCCGACACGACCTGCGCCCCACCCCGTCGGCGAGCCACCCATGAAAGCGGTCTGGATGCTGACCCTTCGGCGCCTCCGCCTACCACTCCCACTCTCCGCGATACCGTGTCTCCGCACCGTGCGCACCGCCTCAGCTCCACCGCCCGGCGGGTCTTCCTCCGCGTGCGAGTCAGCTTCGAGAAGGCCTCGTACGACAGCGAGAAAAGACAGCGGACGACCGCTGGGATGCTCCGACCCACGGGCGAGGAGCAGCCGCAGGTCCGAGTACGATTTTCAGCGAACCCCCCGAATCTGATGTCAAACCTCGGGTTCGCTGCAAAACAGCCACGAAAAACGCCTCGCGGACAGCCTCCCACCTGCGGCTTTACTCTCGG # Right flank : CCGATGCGCTTGTGCCAGCTGTCTTCCGCACCGCGTGGTGGCCTTCATCGCGCCTCGTCGGGGGCCGACCAGGCGTAGCGGCGTCCAGGGGCCAAGCCGTGACGGCCTGAACGGTCAGCGGACGTCCGAGCGAGGAAACCCAGCGCGGGAAGGGTGTTGGCCAGCAGACGTGAGGCATCCGCTCTTCATGCTCGCTTCCGGTTCGGGCGCGGACAGTGGTACTCCGCGCCCGAACCCACGGCAGGCGCCTGACGCGGGACGGCGTTGCGTCGGCGGTCAGCGGTGCCCGAAGGTCAGCGGCGGATCCACCCGAAACCGCCGGAGTTGCGGGCACCGAGGCCCCAGGCCCAGAGGGCCCGGAGGGAGTCGGGCTCGCCGTGCACCCGCACGCGCACGGTGGCCCCGGCCTGGCGGCCGCGCCCGATGGCGAAGGACCTCTTCGGTCCGGTGGGAGTGACCTCGCTGAGCTTGATGTCGGAGTCGAGCTTCAACGTGTCGAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 17997-17377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000023.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 17996 30 100.0 34 .............................. AGCGCGGCCCGGTACCGGGCGAGGGTCTCCTCGG 17932 30 100.0 34 .............................. GGGGAGGTCCGTGTGTCCCTGCGACACCCACCGG 17868 30 100.0 38 .............................. CCGCGCACCACGGGGTACCGCTGGACGCTGGCGAAGCG 17800 30 100.0 36 .............................. TGGCTGCTGTCCCTGCCGGAATCCTGGGGGGACGGG 17734 30 100.0 35 .............................. GAGGGACGCTGCCCGCAGGACATCGGCCATCCAGG 17669 30 100.0 35 .............................. TCGTTGCGCGCGCTTCCCACCCTTTCACTGCCGGT 17604 30 100.0 35 .............................. AGGTGCAGGACCAGTCGGAGCGGAAGATTCTGCGG 17539 30 100.0 39 .............................. CGGACGTGCAGCGGACGGTGACCCGATGACCCCCGGCCC 17470 30 100.0 36 .............................. CACACCGTGCACGCCGGCAGAGGTGTGGCCTGTCGG 17404 28 90.0 0 .....................--.....G. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.0 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GCCACCACGGTGCGCGGTGGGGACACCACCCGGCGCGTCCAAACCCCGGATGTCCGGTCTGTTCTCGGGGGACGCGCGCCCACGAGCCAGGTGCCCGCGCCCCCGGCGGACGAGGTATCCGCGCACTCGCGACGTCCCCACCGCCCGGCCACCATCGAAGCCGCCGTCGCGCCGCGTGGGCGGGCCATTCGGAGGAGCAGGTTCTGCGCACCGGAGGTGGAGGAGCCGGCTCGGTTCGGCGTCTGGCAGGAGGCACGTGCCCGATAGCCTTGCTGGACGGCCGGAACACGGTTGGGCTCGGCGGGCGGAACGCTTCGCCCCCTGCTCACCGAACTGCGTCCCTGCCACGGAGACGCCGGGTAGTTGGAGACGGGAGCCATCACCACGTGCAGCCGAATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCGAATTGGGCGTCGTTGAAGCCGTCCAGGTGTATGCTGACCTGCGACTTTACTCTCGG # Right flank : TGAGTGACAGCTTGGGATCGAGCAACGTGTTGCGGCTTCTCGCACCGTAGACACCTCGTGACGTGGCCAATCAGGCGTGGGATGCGTGATGACCGCCCCAGCTGGCAACTCATCAATCGTATTCCCACGAGGCAGGCGCTGAGCGTCAGGCGGGCAGCGCGCTGCTCGTCCAAGGCTCGATGAGCTGTTCGACGAGCAGGTGGTCTCAGAGCCTCGGCCCGGTGGTGTTGGTTTGCCGCGCTAGTCCTCGGAGGCCGGCGCTACTCGGCGAGCGAAGCATGCGGTAGGCGCGGGATGGCCAGTCTCGACGAGCGAGCGACCGCATGTCCGGGCAACGCCGACGAACCCAGTCGCCCTTCGCACGGCGCTCACACCCACCCTGACTCCGCCTCCATCGAACGATTCAGTACTTTAGGTATCCGAACACGCACTGAGTGTCACAATCCATGAGTGTGACCACGGACGAGGGAGACTCCCTTGGTGCACTGCCGAGACTGCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 24003-24275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000023.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24003 29 100.0 33 ............................. GGGTACGACGTCGACACCCTCATGAGGGAATCG 24065 29 100.0 32 ............................. CGGGTTGTAAACCTTGGCGCCCCCTTCGTCTG 24126 29 100.0 32 ............................. AGGACGCCGTCCTCACGGATGCCCGCGCGGAC 24187 28 93.1 32 .....-......................G CCGCCGGCCAGCCGCCCGGCTTCGAGTGCGGC 24247 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CTCGTGATGTACCGGCTCACGGAACGCGGGCACACCCTGGTCGGAATCATCCTGGGAGCCGAGCCCCCAGCGCCGGCCGAGACCACGGCCTCCGCGAGAACGGGCGTGTCGCCGCACGTCGGCGGGTGACGGAGGCCGACCAGGTCAGTTGAGCCGCCCGACCACGAGCCGCGTGGTGACGAGCCGCGTGGCCGCTCGATCGCCGAGTGAGGCTCCCGCGCCCAGCCCGACCTCCTACCTGCTGGCGACTGAGGGCGACACCTACCGAGGCCGTGCCTCCTGGACGGGATGTTTCATGCCGGCGGAGGGGGACCGCCCGGGACGTGGTGGTGACCTGATCGGCTGCCAGGTCCTCCTTCGGGAGTTGACGCGGCGACCAGCGGTCGGTGCGCGCCGATGACCGGCATACTGAGTGCCGGAGGCGTGCGGTGCCGATCAACGCTTCGAGAGAAGTGAATGAAAAAGGGGCAAGTGCTCCGCGATACCGCAGGTCAGGAAGT # Right flank : GGACACCCAGAAGTCCATCGACCAGTTCGCCGGGGCCTCCCCGCCCGCAGGGCCCAGGCCCTCTACAGGGGACTCCCTCGCCAGCGCAAGTGGGGCGGAGAGGGGCACCAGTGGGCGTCCAGCGGGCCTCCCAAACAGTGCCTGACCTCGTGATTGTCCGCCGGGGTCGCACTGCGATGAGCTGGTCCCATGCCCCTACGACACTGTCTGCTCGCCCTGTCCGTCGCGGTGGTGTGGGGGCTGAACTTCGTCGCCATCAGCGCCTCGTTGGAGCACTTCCCGCCGATGTTCCTGGTGGCGTTGCGGTTCGCGGTGGTCGCCATCCCGACCGTCCTGTTCGTCCCCGCCCCTGGCGTCCCCCTGCGGTGGTTGCTCGGTTACGGCTGCGGGTTCGGCATCGTGCAGTTCCTCTTCCTCTTCTGGGGCATGGCCGTGGGCATGCCGACAGGTCTGGCGTCGCTGGTGCTCCAGTCCTCCGCGCCCTTCACCGTGCTGCTCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226253-226466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000002.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 226253 29 96.6 34 ............................T CGACAACCGGGGGACACTGTTCCTCCCGGGCCGT 226316 29 100.0 32 ............................. AACATCCCGAAGTCGAAGGAGTCACCGAACAC 226377 29 100.0 32 ............................. CATTGTCCCGTGACGGGCGCGACTGATCACGT 226438 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 4 29 98.3 33 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CCGGCCGTGCGGGCAGCCGAGTCGGACACCCTGGTGCTCGCCGACGGGTTCAGTTGCCGGACGCAGCTCGCCCAGGGCCTGGGGCGGGACTCCTCGCACCTCGCCGAGGTGCTGCGGGACGCGCTGCGGGCGGCGGCAACGCGGGGCGGAACGCCGGCGAGCTGACGGGTCGCGGAGGGCTGGGGAGGCCAGCGGGCGCGAGGAGAGCGGGCTCCGTCCGGACCAGCCCGGGACGAACGCGTGTCGTCGCCCGCCGTTCCCGGCCCGGGAGCAGGACTGCACGCGGCCTCCTCTCCGGGCGGAGCACGGTGCTCGGGGCGGCCAGGGCCGTCGGGGCGCGGCGTGCGACGTGGAGCCTGGGCGTCAACGCGCGGAACCGGTGGCCCTACCAGCTCGCCGAGTGCGGATACCCTGACCGGACGAGGACGCGGCGGCGTGAGGTGCTCGGAAAAGTGAACGAGAACCGAGCGTGCCGCCCCTAACGCCGCAGGTCGGAAAGT # Right flank : GGCCTCCTGCTTCAAGTTCGTGAAGTCGTTGGCGTCGTCCCCGCACGCTGGGGGTGGTGCGGTTGGGTCGGCGAGTTGACGGTGCGGCCGGCGGGGTGGGCCGCCGGCCGTGCGGCCACCGGTACTGTCCTCAGCCCGCCTTGGCCCGTTCTCGGTCGGCTTCCGGGGACCACGGGCTGCGGCCCGTCACCGGTCGGGTCCCGTCGTGGAACGCGGGGCGCAGCGGTTCCCGGTGGCGCAGCGGGCGCAGGCCCCTGCTGATCGCCCGCATGATGCGGTCCCGGGCCCGCACGGCGTCGCCGGGGCGGCCCGACTCCAGTCCGGACAGTTCGACCGGGTGACCGAAGTGCACCCGGAAGGTGGGACGCCGGCGCATGGCCTGGAACCACGACCGGAAGAGGATCCACAGGTCGGCCCGGCTCTCGATCCGCAGCGTGCCCCAGCACACCGCCTCGTGCGCGCCCCACTGGCTCACCGGTACCACGGGAGCCCCCGAGGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41998-40711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000024.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41997 37 100.0 35 ..................................... TGGGCCCACGTTTTGACCTCGACGAGGCCCCCCTG 41925 37 100.0 37 ..................................... CGGGCCGCGGCGTACCCGTTGCTGCCGAGCATCACCG 41851 37 100.0 36 ..................................... ATCCCGGTGGCGGCGATCGCGACCGCCCACGACAGG 41778 37 100.0 37 ..................................... AACGCCGCGGCGACCTGGAGCGCGCGCATCTTCCGGG 41704 37 100.0 35 ..................................... TGCGGCCATCGCTGCATCGCGGAGATCGGCCTCGG 41632 37 100.0 36 ..................................... CCAGAATTGCGATTATCCAGGCCAAGGTGATCACGT 41559 37 100.0 38 ..................................... AGGACGCGGTGGAGGGGACGACCCCCCGGAAGTCGGTT 41484 37 100.0 36 ..................................... GCGCCCACGTGCCCGACTGGCGGGTGGCCCCGTCGG 41411 37 100.0 37 ..................................... ACGAGGCCATCCGGCCCCGGATTCGGCCGGCGGCGCC 41337 37 100.0 37 ..................................... GGCAGCCTCTTGGTCGGTCACCTCATCAACCTCGGCA 41263 37 97.3 39 .......T............................. TCGGCGTGGGCACCGCACGTGTCGGTGCCCCACCGGGGA 41187 37 100.0 35 ..................................... CTCGACGAGGCGCAGGACAGCAACCCGTGCGTCGC 41115 37 97.3 37 .............A....................... CAAATGTCGATCTCTACGGCACCGCCTGACATCGCGA 41041 37 100.0 37 ..................................... CAGGGGGGCTGTGTGGAGATCGGCGGCGCTCCTGGCG 40967 37 100.0 37 ..................................... CTGCCCACTGAGGACGACTCGTACCCCTGGATCAGCG 40893 37 100.0 37 ..................................... GGCGGCGCGGCGGTCGGCGTGCCCACCGCTCCTTGCG 40819 37 100.0 35 ..................................... CGCGACCTGGAGGGGACGACCCGCCTCGTGCCGGG 40747 37 94.6 0 ..............T.........C............ | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.4 37 GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CACAACCGCCCTCAGGATGGCCAGAGCCGCCGTCCAGTGCGCACTCCCGGAGGGTCCTTTTCGGACGTACGGCCCCTCGCCCTCCCCGGACGTGGGGACCGGCTGTCGCCGGACCGTCAGCGGACACGCCGCAGGCGTGGCGTGGAGCGGACGAGCCGCGAGAGAGGAACGCGTGCCACGGACGCGGGGTGCGCGTCGACCGAAGGCGGGGAGGGGATGCGCGGTAGCTGGCACGGGGGAGGTCGAAGCCGCGGATCGCCGACGGAAGCGCGGTTCCGGATGCCGTGGGGTGGCCGGTACCGTGAGGCGCCAGTGCCGTGAGGACAGCCCGAGAACGGTCATTCGGGTTCGGTCGGAGGGTCATGATCCTGCTTGGGAATCGGAAGCGTCACGCGACACGCCTGACCTCTCCCAACCAATTCCCGGGCGTGTCGACTGTTTTGCCTGGTTCCTGCGCGCTTCGTGGAGCGCGTAACCTGGAAAACCGCTGCTCGCGCAGC # Right flank : GACGGGCCACAGGGCTGAAGGTGATCAGCTACGCCCTGGCTGGCCAGGCCGACGCCAGTGCGCGGGTGCTGGACGAAGCGATGCGCCTGCTCTCCCAGCCCAGCCGGGACGACGAAGTCCGTTTGGGGCAGCGCAGCGTCGTCGGCGACGACCTGTACGCGGTCTACCAAACCACCTGCGACATCTACCTCGGTCTCGGTACCGACGTGATCGACGCGCTACAACCCCGGTTGGATGGACTGGCCCGCTCCTCGCCCCGCACGGCCATGATCAGCCGCGCGAAGCTGGCTCACGCGTATGCCAACGCCGGCCAACCCGCCGACGCCGTCCGACTGGCCCGGGAAACGCTGGACGCCCACGACCAGGTCGGCTCGCACTCCGCCTTGACCGAGGTCCGGCGCACATCGCGCGTGCTGCGCCAGTGGGAGGTTCGTGCGGACGTGCGCTGGGAGATAGCCGACCTCGCCCACCGGCTGTCCGGCTGACCATCGGCCAGCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 32651-32500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000029.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32650 29 100.0 32 ............................. CACGCTGGTAGCGGCAGCCAGCGCCGCCCCGA 32589 29 100.0 32 ............................. ACAAACAGCCCGGCGCGCATGTACTCGACGTA 32528 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : ACCGCGCGTCGCCGCAACTCCTGGGGGTATTTCTTCGCGGAACCCATGCTCCTCATCCTTCCTGGGGTGCAGGGCCTCCAACAAACCCAGTACGGTCCAGTCGCTACCTGTCGACAGGATT # Right flank : AGGTGGCGGCCGTCCGTCAACCCGCCACGTCGTCCCCGCGCGAAGCTGGTCCCGAGGATTGATGGGGTCTCCGCGCTCAGCTGCGAAGCGGAGAGCGACGGCCCACCCGCACGTCGTCACCGACGGTGAGAGTCAGTCGGTCGATGTTGCCGACTCACCGATTCGCCAACGAGGTAGTGAGGTTTTCCTTACTGGTCCCGGACATAACGTCCCCCAACAGGGGGACGTCGTACCGACAGGAGGAGGACCATGGAGTTCGGAATACTGGGGCCGCTGTCGGTGTCGCGAGGCGGCGCGCCGCTCCCGGTGTCCGGAGTGCACCAACGTGCCGTTCTCGCCTACCTGCTGCTCCACGGCAACGAGGTCATCCCCACCAGCAGGCTCCTGCGCACCATGTGGGGCGACAACGCGCCACGCACCGCCCGGAAGATGTTGCAGAACGCGGTGTCGGGGCTGCGCGGGCTGCTCGCCGCCGAGGAGGACGCGCCGATCCTGCTCAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4222-4774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000030.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig30.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4222 30 100.0 36 .............................. TTGAACGGTGGTTGTCCACCTCGACGAACCCGGCGG 4288 30 100.0 37 .............................. AAGTCGAGCAGCTTGCCGGCGCGGACCGGGGGCTCGG 4355 30 100.0 35 .............................. GGGCGGGTCCGGACGTTGCGGCCGGTGCAGGCGGT 4420 30 100.0 36 .............................. TCGGACGCTGGCGCGGCGGACGGGACGGGCTCACGA 4486 30 100.0 35 .............................. AGGGGCCGAGCCGCCTCGACCCGGTCCAGCGCCAC 4551 30 100.0 35 .............................. TTGACCCGCCGGTGCCGGCGGGCGTACGCCGGCAC 4616 30 100.0 35 .............................. GGCATGTTTGGCCTGGTCATGGACCTGATGGGGTG 4681 30 100.0 34 .............................. GCGCCCGGCGGCGGCCGACCGGGGAGGGATCGCA 4745 30 90.0 0 ................G..........TG. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GGTCCGGGTGAGCGGAGGTCACTCGCCTACGTGAACACCTTCTACTACTGGCTCGGCCCGTCCGTCGCCTGCTGAGTCCGGAGCGGTGCGCGTCGCCGGTGCGGCAGGACGGGCCCGGCGGCCCCACCGCAGGTCCGGGCGACCCGGCGGGCGCGTCGGTGTCGGCCTCGGCGCCGGGCAGACCGAGGACCGGCGCGGCGGCGTACGAGGGCGGTGGGCGGCATAGCCGGTGGGTCACGATGAGCGGAGGGGAGGGCGGCGGCGCTGGTCGTCCTCCCCCATCCGGCCGTCGTGCGGTCCCCGCGACGGAGCGCGCCGGCGGCGTGCGGTATACCGGAACGACGCCCCCCGGGAACGACGGAAGTGGGAGACAGGAGCCACCACGAGTGCGGCCGGATTTCAGCGAACCCCCCGGGGCTGATGTCAAACCTCGGGTTCGCTGCGGAACTGACGCGATCGACGCCATCCACGTGTATCCTGACCTGCGACTTTACTCTCGG # Right flank : CGCCACCCTGTCCGCCTGCTCCGGGGTGCGGTCCGTGGTTCTCTGAGTTCCGGTGCGGGCCTCGCGAACCGGCGCCAGGTCGTCCAGGACCTGGGAAGCGTTGACACCCTGTGACCGCCCTGCTGCAATTCACCCGTGGTTCCCACGGTGCTGACTCGACGGCGGCACATCGACTTCGCCCGCGTCAACACCCAGGCGTGTCGTAGCTCCCTGTTCCTCGAGCTCTGACCGCCCATCCCGGGTCGCTCCGGCCCGCTTCCCGTGAGGAACCACCACCATGTCGTCGCGTTGGCAGTCCACGTCCGATTCCCCCAGCCCCGAGTTGCGGGCGGTGCCCTGTCAGGTCTCCTCGGCGCCGGTCCACCAGGGCCAGCCGAGTGCTCACGCCGAGATGACGGTGACCATCACCGTCCGCACGGACGTGGAGGAGGCTGCGTCGGTCACGGGCCGCCTGGTGCGGGCGGTACGCCGGGCCGTCGACCTCTCGGCGGCCTCGCTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 232635-232967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000006.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 232635 28 96.4 33 .C.......................... GGTCTGCTTGAGCTGCACGACCTTGGTAGCGGG 232696 28 100.0 33 ............................ GTTGGCGGACGCCCACGGACGTCTGCGGGGGCA 232757 28 100.0 33 ............................ GTCGTCCACATCGCCCGCGCCTCCACCGGGGCG 232818 28 100.0 33 ............................ GAGATGGGGCAGCAGCCCCGGACGGGACCCCTC 232879 28 100.0 33 ............................ GACGACCCTCGCCGCAGGAGTGGCTGGCGCCCT 232940 28 92.9 0 ..................A........G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : ACGACGTCCGCCACCCCGAGCACGGGCACGGGTGGGTGCAGGGAGCGGGGGTCGGCAGGGTGACGGTGCGGTTCGAGACCAGGACGACCGGGCCCGGACCGGCCAGGACCTTCGCGATGGACGACCCCGCGCTGCGAGTCGCGGACCCGCTCGCGAGCCTGGACTGGTTACCCGTCGTGGGCAGGAGGAACGACCTGGCACGGGCCCGGACGGTCGAGGACGGGAGGACGCCGCACCCGGGTCCGGCCGCCGGTTCCACGACGGTCATGGAGTGGGTGGCACCCGTCGGCCAGGAGCACGACGCCGTGAGCTCGTGAACGAGCACCGGGAACAGGGGGCGACGTGGACGATGGTGGAGGAGCAGCCGACTGGCCGCGCCGGCGGCGATCCGTTCTGAGCGGCGTGCCACCACGCGACGGGACTGAGCGGGAGTAGGCTGATCATCGAGGCCGCAAGGTCAAGGAATGATAACGGCACTCCATTCGCGCTGGTCGCGAAGG # Right flank : GGGTGCTCGACCGCGGATCTGAGCAGGGCGGCTACCGCCGCCACCCGCCGGTGAGCACCGCCCGGCCGGCCCGTTCGCGTCTTCGGTCCGGCCGGAACCGGGATGTCACACGTCCGGAACGCGCGGGCGGCTCATCGCCGTGGCCGCAGGCCCGCGACCAGCTCGTCCGCCGCCGTGTAGGGGTCGGTCCGCCCGGCCAGCACCCGGTCGGCGAGGTCGACCAGCGCGGAGCCGCCCCGCACATCCCCCAGCCGGCCCCGCAACTCCTCGACCGCGATCGCCTCGACCTCACTGGCGGCTCGCCGCCGCCGCCGGGCACTGAGCTCTCCGTGTTCCCGCATCCAGTCGTGGTGTTCGTCGACAGCCGCGACGAGCTCGGTCATCCCCTCCGCCCGGGATGCGACGGTCCGCACGATCGGCGGACGCCAACTCGGCCCCTCCTTCTCCCGGCGGCCCAGGGAGATCATGTGCTTGAGCTCGCGGACGGTCTGGTCGGTGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266826-266434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000007.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 266825 28 100.0 33 ............................ GCAGGTCGAACCCCATGCGGCGGGCCGACTCCG 266764 28 100.0 33 ............................ GGACACCTCCAGCCCTCCTCTGGGGCCTGGACC 266703 28 100.0 33 ............................ GGTGACTCGCGTCGCGGCCCCATCCGCCGCACT 266642 28 100.0 33 ............................ GCACCCGGTGTCCTATCCCGCCCCGCGTCCGCC 266581 28 100.0 33 ............................ GCCGGCGGACGTCGTCGGCCGGGACGCTGTCCG 266520 28 92.9 33 ................T..........G GCCGCCACCTGCCGGCCGCATCCGCACCCCCCG 266459 26 82.1 0 .......TT.......T...--...... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : CGCCGTGGTCGGCGCGGCCAGGTGGCACCGACGGGATGTGCGCTCGTTCGAGTGCCAGGTGCCCCCCTGGATGCCGCCGTCGGACCGCCGCCGGCTGGCCGGAGCGGGGGTGGCGCTGCGGGCGGTGGTGAGGTTCGGGGCGGACGCCGGGCCGCCGGTCGTGCCTCGGCCTGGGCACTGAACTCGAGCGTGGTGCTCCGCCTGCGGGCCGGCGCGGTGGTGCGAGTGGTGGACGGGGACGTCGGTGGGTGTGCCCTGACGGTCGGTCACTGGGGCGGGCGTTGGAGCACGTGGCCGGTGGTGGCGGCGGTACGGTGGGCGGCGTGACGAGGTCGGCGGTGGGAGTCGCGGCGGTCGAGGGCGAGGTCGCGAGTCCAACGGGGACCGACCGCGCCGGGAAGGGGCAGCCATCGCGGGCCGGAGCCCGGCGCCAACGGTGGCGCCGAACCGCACAAGGTCAAGAAACGGTAACGGTCCTCCATTGGTGCAGGTCGCGAAGG # Right flank : GCGCCTCGCGACCGGGTACCCGGTCACCCCTCGGCGGCGGGCAGGGGCGTGTCCGGAGTGATGTTCCGGTCCCGGCACGGGTGCTGGTGATGTGGTCCGCCCGGCTCCCGCTGGCCGGGCGGCACGGAACAGCCCCCGGCTCCGCGCGGAGCCGGGGGCTGGGGTGGTTGTCAGTGCAGGCGGTCGGCCTTGACGGCGTCGACCAGGGCCACGAAGGCGGTCCGGTGCACCAGAAGTGTTCCGCCGTCCCGGTTCTTGGTGTCGCGGATGCCGACGACCTCGCTCGCTCCCGTACCGATCTCGACGCAGTTGGACGACGAGACGGATCGTCGAGGTTTGCGCCACCGTGTCACAGCTCGCCCTCCAGTGCGCGCAGCCGCGTCCGCGACTCCTCCTCCGACAGGGCCACGCCGAGCAGGTGGTCTCTCGTCGCGACCACGGGCGCGACGTCCCGTTCGCTGTACAGCCAGGTGGATGACCGGTAGTGCTCCAGGTGCACG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40969-39470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000004.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 40968 37 100.0 35 ..................................... ACATCACACCCGCCCCGTACGAATAGGTCTGTCGT 40896 37 100.0 36 ..................................... GACATGGTGTCTCCGTGGGTCGTGCCCACCCGCGCG 40823 37 100.0 36 ..................................... GGTTTCCGCCGGGAAATCCCCCGGCGGACTCCGTGT 40750 37 100.0 35 ..................................... CTCGCCGGCGGGATCAGCAACATCGCTGAACCCTG 40678 37 100.0 33 ..................................... GCGTTCGCAACCGTTCATAAGCGCGAATATGCG 40608 37 100.0 38 ..................................... ACCCGACCCCGATCACCACGACCGCGCGGACCTGACCG 40533 37 100.0 35 ..................................... GCCGGGCTGGGCGTGGATGCGTGCCCGGGCATCCG 40461 37 100.0 39 ..................................... CTCGGCGTTGAGCGGCTGCGTCACGGCAACCTCCTCCTG 40385 37 100.0 40 ..................................... GTGAAGTCATTGCCCGAGTTGCCGACCCAGTAGGCGTCGG 40308 37 100.0 33 ..................................... GAAACCGCCGACGAACTCGACGCCGCCGCCCAG 40238 37 97.3 35 ......T.............................. CCGACGCCCCGTCTGGCGATCGCGACGCTGGACCC 40166 37 100.0 36 ..................................... CGTCGACGTACCGGCCGATGGTGACGCGGTCGCGGA 40093 37 100.0 36 ..................................... GCCGGGCCGCCCGGCGATCAGTCGTCGTACAGGGTG 40020 37 100.0 39 ..................................... CTGTACATCGCTGGCATCCATGCGATGGGGACGTTGGGC 39944 37 97.3 36 ................G.................... ACCAAGACCGGCCAGGACCTCTGGCCCCTGAAACCC 39871 37 94.6 35 ..............T.G.................... GTGGTGGCTCCGCTGGGGCGAGTACGCCCGGCACT 39799 37 97.3 34 ................G.................... GAAAGCGTGAAGCTGGCCTCGTCGAGGACGAGGA 39728 37 94.6 37 ................G..A................. GTCGACGCGGAGCAGGAGCGCGGCCGGGAAGCCGAGC 39654 37 94.6 38 ..............GG..................... AGTGCCTCGCCCGAAGACTCCCGCGAGCTGGCCCGCCA 39579 37 100.0 36 ..................................... GAGGTCACGCACTTCGTCATGCGGGGCGACTTCGGC 39506 36 86.5 0 ................G....-...........T.GA | T [39473] ========== ====== ====== ====== ===================================== ======================================== ================== 21 37 98.2 36 GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Left flank : TGACCACCCCTGACCTGCGGTGCGTCGCCGTGACCAGCCTGGCGGCGCACCGCAACACCACCCGTGTCCCCGAACGCCCGCGCGGGGACACGGCCCGTCGGCCCGGTCCACCACTCCGGTGGGCCGGGCCGAGGTCCACCCAGGCCCGCCCCGCATGCGCGCCGGGCGGTGCGCCAGGGCCTGCGCGCGCCGGGTGGTCACCAGGTGCGGGGCAGGGGCGACGGTGCGGAGGAGGGGCCCCGGCGCTCACGGGGCGCTGTGCTCGGGAGGTCCATGCCGGGGCGGCGGTAACATCAACCGGTGTCCTTCGGTAGCGGTGTCCCCGCAGCCGTGCGCTCGGTGCAACGGCATCCGATCAGCCGCCTCCCTCGAGCGCGGATCGGAAGCGTCACGCGACACACCGGTGCTCTCCTAAGCGAATCCCGGGCGTGTTGTCCGATATGTCTGTCTCATGGTGGCGTGGTGTCGCCTCTAGACTGGAAACCCGCTGCTCGCGCAGC # Right flank : ACTGAGCATGTCCGTCACGATCATGGAGGCCTAGGGGAGTGCGCTGTTCAGGACGATCTCGCGAAAGGTGTCGTCCTTCAATCGCTGCGCGCGGCGCCGTCCGCCTCGATCTCCTCCACCTCCTCGTCCCCGTGGTTCTGCTCGTCGACCTCGAGGAACGTGTTCAGCTGAAGCAGCACACGGGGGGGCTGACGGGTCCAGTTGCCCGTACGCGCGGGCGTGGTTGATGCCGATCGAGTTCCGTTCTCCGGTCGCCGGGTCGATTCCGACCGAGGTGAGCTCGTCGTCGAGGAGTTCGCAGGGGTCCAGACCTCCCAGGGTTGCGCTTGCCGAGGAGGAACCAGTTCCGCTGCTCGGTGTGGACGCCCCGCCCGTCGCGGAGGCGTCCGTTTCGGACGTCCCCGACTGGTCGCCGTTGGTGGTGGGGGTGGCGTGACCGGCCGACTCCCGGACGCAGCCGCTGATCGTGACGAGCGCCGCCAGCAGTGGACCTACCAGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTCCAGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-16.70,-16.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 237194-236617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000004.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237193 29 96.6 32 ............................C GACGCCGGCGAGATGCATCGCCAGCTGATGAC 237132 29 100.0 32 ............................. ACCGAGGGGCACGGGCATGTCGGTCATCGGGA 237071 29 96.6 32 ............................A CCATCGACGACGTCCGAGCACGGGCGTCGCTC 237010 29 96.6 32 ............................C GAGGCCTGGTGCTCGGCGATGTCCTGCCGGTG 236949 29 100.0 32 ............................. TTCCCCGGAGCCAGGCTGTCCCAGCCCGAATC 236888 29 96.6 32 ............................T GAGATCCGCGCCGTCAAGGCGCTCAGTACGGA 236827 29 100.0 32 ............................. CTCCTGTCGGAAATCCGGCTGAACGAATCGCT 236766 29 100.0 32 ............................. AGCCCAAGCTGGTTCGGGTCCACCACCTCGAC 236705 29 89.7 32 ...............T......G.....C TCGTCCACAGGGGCGGCCGGTGCGGACAGCCG 236644 28 79.3 0 ...-..........T.....A...C..GT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : ATGTGCCCGGCGCTGGGGTCCGAGTGGAAGGTCATCACGACCTCCGGATTCGCGAGCAGGTGGCGCACCTTGGCGGCGTGCGGCTCACTGAAGACGACGAGTTTCTCCTCCAGGTAGACGAACCAGACGGGGCGGAGTGCTGGCCGGTTGCTGGGGGTCACGGTGCCGAGCCAGAGAACTCGGTCCTCGGCCTTCTCCGACAGGCCTTCCAGGGGCGAACCAGTAGTCATGCCACAACGCTAGGAGTTCCACATTGCTTGAGGTCAAGGTCCTGGTGGTGGATGGGCGCCAGTGCTCCGTCTTCGGCAGACGGCTCCGCCCGGGGTTGGAGGCAGGGGACAGGAGGGGGCAATGCGGACAATGACGAGTGCTCCTGCGAGGCGCTTCCGGTTCGTCGAGACGGTTCGGCGGCGCTCAGGGAACCGGAGCATCCCGTATGGTGACGGAACAAAGTGAATGAGAATCGGTGTGGGCGCTCCTAACGCCGCAGGTCAGGAAGT # Right flank : GATGTTGGCTGCTTCCGGGGGGCTGCCGAGTTCACGCATCGGGCCCCGTCGTCGACCAGCCGCCGTTCGGGTGGGCACGTTCACCGACTGCTGCTAGCCCCAAAGGGTGAACTCTGTGCTGCGTGAGCGTGATTCGAGCTGGCACTCCTACAGTCCTGGCATGGCCGCATGGCACCAGCCCCCATGTCCGGGTGTGGCAACTCTCCGCATTTCTCCCGACCAGGCTCCCCCCACCTCGTGCCGGTGTTGAGCAGGAGGGTCATCTGCCCGTGCGGCAGCATGACCCTGTTCGAGCCGCCCAACTGCCAGCGGCGGTCCTGCCTCCGCCGTTGGACGTGGCTGTGGTGCGTTCCGGCGCTCGTCCTGCTGGTGCTCATCATCCCGCTGACCGTGGCGGTGTGGGGCGACTCCTCGCCCTGTGACGAGGGGTTCCGATCGCTCGGCCCGCAGGTCTGCGTGCGGGAGTAGACGTCCTGATCGCTTTCCACCGGGTTGGTGGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 243882-243608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000004.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243881 29 96.6 32 ............................G ACCTCGGCAGCTCGGCTGACGAGCCTGCTCGA 243820 29 100.0 32 ............................. AACAGGTATGCCGCCAGGGACCAGGGGGCGTC 243759 29 100.0 32 ............................. ACCATGTGGCACTCGTCGATGACCACGAGGAT 243698 29 96.6 33 ............................G TCTGGGGCCTCACCTCGCAGGGCCGGATGTGCA 243636 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.3 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GTCATGTTGTGGAACGAGGACGGGCCGGACGTGCGGGCCGGGGTCTCCTACGGGCAGGACGACGAGTACGACGACGGCATCGACCAGGTCGGGGAGACGTCGTGACCGTGGTCGTGGTGACAGCCTGCCCGGTGGGCTTGCGCGGCCACCTCACTCGCTGGTTGCTGGAGATCTCCCCCGGTGTCTTCGTCGGCGGCATCACGGCTCGGGTGCGCACACTGTTGTGGGGACGCGTCCAGGAGATGGTGAAGACCGGCCGAGCGATCATGGTCTACAACACGGACACCGAGCAGGGGTTGGCCTTCGAGGTGCACGGCCACGAGTGGACACCGGTGGATCACGAGGGGGTCCAACTCATGCTGAGGCCCGCGCAGCGGAAGCGCTCCGCGCCGAAGCAGCGCGCGGGCTGGAGCACCGCCAGCAGGAGGAGGCGGTACGGCCGTGGCCAGAAAAGTGAATGAAAACCCCGGGAGTGCTCCTAACATCGCAGGTCAGGAAGT # Right flank : CACCGCCAACTTCGCCCGTTCGCTGGTCCCGGTCCTCTAGGGGCCTCGTTGGGTGGGTTTGGTTCCCGGGGGTGCTGTCGCCGGTGGTGGCCGGCGGTGGTGCCGTTCGCGCTGGCGTAAGCCGGCCTGACCGGACGTCATCCGTTCCGGGGTCATGGGGGCTGGGTAGCGACATGCCCGGAACCACTGCTCTCGAAAAACAAGTGCGGAGTTGTATGGTGCCAGCATGCGGACGTACGGGGACGCGTGCGGGATCACCCGGGCGCTGGACGCGGTGGGGGAGCGGTGGGCGCTCCCGGTCGTGCGGGAGTTGGTGTTCGGGCCACGGCGGTACTCGGATCTCGCCGCCGCGCTGCCCGGCGTGAGCACGAACATCCTGGGCACCCGGCTGCGGGAGCTGGCCGAGGTCGGGGTGGTGGTCCGGCGGCGCCTCCCGCCACCCACGCCGGTCGCGGTCTACGAACTCACTGCCTGGGGGCGCGCGCTCGAGCCGGTGCTGA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 253965-253509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000004.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253964 29 100.0 32 ............................. ACCGCCCGCCAGATCGAGCTATCCTGCTGCAT 253903 29 100.0 32 ............................. GACAGCGAGGTGCACCAGTAGTCGTTGGACAG 253842 29 96.6 32 ............................G AGCCTCATTCCGGCGCGGTGTTCTCGGTCAGC 253781 29 100.0 32 ............................. CCCCACAGAGAGAGGCCAGCATGGCTGGAGAC 253720 29 93.1 32 ................T...........G ACGTCGAAAACCATCATGCCCGGACTCGGTGG 253659 29 96.6 32 ............................G TAGCCACCGGCAGTGCTGGTGCCCATGCTGTC 253598 29 89.7 32 .C.....TT.................... GCGGCGGTCCTGTCGAAGTACCGCCTCATCGA 253537 29 93.1 0 ..........T.................G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GTCCCGGGTGGTCCCCACCGCGACCCTGCGGGAAGAGGCGCTCACCGCCGCCACCCGCATCGCCGGCTTCTCCGCCCCGGCGGTGGCGATGGCCAAGGAGGTCGTCAACCAGGCCTTCGAGACCGGCCTCGCCGAGGGCCTGCTCTTCGAACGCCGCGTCTTCCACTCCACCTTCGCCACCGAGGACCAGAAGGAGGGCATGGCCGCCTTCAGCGAGAAGCGCGCCCCCCAGTTCCGCCACCGCTGAGGGAGGGAAGGCCGCCGCACGTCGGACGCGGAGGGCTGTCCGCCGTCCGTGCCCTTGAGGCATCGCGGGCGAACGCGGGAACCTGGGTGAGGTGTCGCTAGGCTTGTTCGGGAGGGAGCGAACGCCGACCCCGCATCCGGGGAGCTGGCCGCCGGCCGCCGTGCCGATCCCGTGTGAGGTTCCCGAGGTGGAGATGCCAGAAAAAGTGAATGAAAACCGGGCCGGGTCGCGGTAAACCCGCAGGTCAAGAAGT # Right flank : GTCCTCGCGCTGGACATACCGTTGGGGACGCTGCCCTCCTCCGCCCAGGAGCTTGCCCGGTCGGGCTCGTCCATGAGCTGGACCCTCGGTGGGTCGAGTGTCGGATGTGGAGCTGACGGGCAACGCAGGGCGCACAGCACTGGAGCCGGCCAGCTGGTCCACGGACGCGGGGACGCGGCTGCTCGTCACCGAGGTGCGGCCAGCCCCCACACGGACCGCTGCCGAACTGCGGCGATCGATCACTCGCTGCTGTGAGGTCCCGGAGTTGGCTAGCCCCGAAGTGGGAAGCCGGGAAAGCGCCTGCGGGGTAACTGGCCGTCTCGGAACGGTTGTCGCGGCAATTCTCCGTCGGGGGCTCCCGTCGTTGTTGGCTCACTGGCCAATCTCCGCAGTCCTCGTTTCCTGTCGGTGCTCGGTGCTAGGAAACCGCTCGGGTCGTGGGGTTCCGGGCGGTTACCCGGAACCTAACTTTCCCAGTCGTGCGCTGGTGATTTTCCATC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89263-89056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000009.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89262 29 100.0 32 ............................. TGGCGCTGGCCAGGAGTTCTCATCCTCATCTG 89201 29 96.6 32 ............................C GTGTCAGCCGCCCGTCCCCGACCCGGTGCGGC 89140 29 100.0 26 ............................. CCAGGGCGGACGACTAACCACCGGAC 89085 29 69.0 0 .C.....T.C....AAG......CG...T | T [89074] ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 30 GTCGTCCCCGCGCACGCGGGGCTGTTCCA # Left flank : CTCCCCGCGCACGCGGGGCTGTTCCCTCTGAGCCACCTGTTGGCATCGACGTTCGTGGACGATCCGCTGACCACTGAGACGTTCATCGCGGCCGAAGACGCTGGCCTCCTCGCTCGATCCGGCGGAAACAGCAGACATGATCAAGTCATACCTACGTCACCACCAGGAGAGATGGATCCATGCAGGTTGATGGCGAGTTTGGACGCTGGCGCAAGGCAAGCCGCAGCGGCCCCCAGGTCGAGTGCGTGGAAGTTGGCAGCAACGCGGATCACGTCGCGATCAGGGACACCAAGAACAGGGGTGGAGGAACCTTGGTAGTCGACCATCCGACCTTCGGCGCTTTCCTCACTGCTGTCAAGGACAAGCGCTTCTGATGCGTAGCGGGCCAACCGGACCCACACGCGGCATGGGGAGGGCAGGTCGGGGCGAGAGCTGGGGGTGGTGCAGGCAAAGTGACAGAGAACGTGCGGGTAGGAGTGTAAACGCGCTGGTCAGGAAGT # Right flank : CACGCCTCCTGGGGCTGGGCGCGACTACTTGGCAGGGCGGCGAGCGTGGATCGAGCGATCGGGGTGCGCTGTCGGGCTACCCGGCACCGGGTAAGCATGTCGGGGGACGTGCCTCGCCCGCCCTACACCTCGCCCAGGCCCCGCAGCGCCTCGCGGACCTGCCCTTCGGTCGGTTGGCTCGCGGGAAGCGGGGTGCGGGCGGCCTCGGCGCGCAGGCCGTCCAGGAGGTAGGCGACCTGCCGGCGCCAGGCGTCCGGAGCGGCGTCGGCGGTGGCACGGGCCAGTAGCGCGTTGGCGGCGAAGGCGAACACCAGGTCGGCGTTGGTGAAGTCGGGGCGCAGGGCGCCGGCCTCGTGGGCCCGTCTGACGATCCGTCGCGCGGCCTCCATGCTGCGGCCGCACGCCGCCATCAGCCGTTCCGCGTCCGGGTAGCGGCCGCCGACCACGTCGGCGACGGCGGGGTCGGTGGCCTGGAGTTCGCAGAGCCTCTCGACGTAGTG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93263-94023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000009.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93263 29 100.0 32 ............................. GTCGTCGCAGGCCACGAGGTCCGCGAGGAGGA 93324 29 96.6 32 ............................G ACCCTCATGCGCGGCCGGATGGTCGAGTCGTC 93385 29 100.0 33 ............................. CCGACGAACTGCCCGGCCTGGTCGTAGGCGACC 93447 29 100.0 32 ............................. GCGTGGGTCCGCCGCGAAAAATCCCGTCCGGG 93508 29 100.0 32 ............................. AGTGCCTCCGCCCTCGCCGCCTTCTGCCGGGC 93569 29 100.0 32 ............................. TGGCCGGCCGGCGGTGTCCGGGCCGAGGACGT 93630 29 96.6 32 ............................G GTGGGCGCGGTCAGGGTGCAGGAGATCGAGCA 93691 29 93.1 32 ...........A................G AGCCGGTTGACGACCCCGATCGCGAGCGCCGC 93752 29 100.0 32 ............................. CATGCCCTCGAAATGATCAAGTACGGGGAGGT 93813 29 96.6 32 ...A......................... CCAGACTTCGCGCTCCCGGTGGGTCCGATGGT 93874 29 89.7 32 ..............T..A.......A... GACCGATTCCGACTCGACATCGACAGCGAGTA 93935 29 89.7 31 ...C.......................TG GCTGGGCGTCTTGGGTTTCCGGCTGAGCGAT C [93960] 93996 28 75.9 0 .....T........-T.C...T...G.G. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.2 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CTGGTCGGGCGAGCCGGGGAATCGGGTGCTGCGAATGACGCCTGCCGGTCGGATGGTGGCGCTGGACCTGCTACCGGCCGTCGAGGCCTTCCTTGCTGAGCTGTCTGGTGTGTCGTCGACGCCCTAGCCTCAGGTCGCTGTGCGACCTGAGCTGGTAGCTCCGCTTCGCCGCCCGTCAGATTCCGGTCGCGGGCAATTCAGGGCAGAAAATGTCCTGAATTCGCCCCCTGCGAGTTCTTGCCTGAGGTCGCGCCCGAGGGACGCGCGCCTCGCGGTGGCTGGGGCATGGGTCGGTCAGGACCTGGGGTCGTGGGCGCAGGGGTAGGTTCGCTAGCAGGACAAGTCGGCTCTGCCGACTGCTTCCTGACTGGACGATCCCGGTGCCCGTGCGACTCGGCGGGAGGCTCATACTGAGGAGGAGACGGAGCGGCGTGGAGCGGAGGCTGGAAGAAGTGAATGAAAACCGGCCCTGTCGCTCGTAACGCCGCAGGTCAGGAAGT # Right flank : CACTGGGACGCACCAGTCGCCGCGAGACCGCGTTCGCTACCATCGGTAGTCGATTGGCTACCCGGAGGCGCCCGGGGAGCTGCGGTAGGGAGCCCGCCCGGGTCTGCCGACGGCTGGGCACGCCTTTGGTCCTCACGAGCAGCTGAGGCCGAGCTGCCCTGGAAAGGAAGGATGCCACGTGAAGTTGCGGGCGTTCGATCAGCTGTTGGCGGGCCTGATCACGACCGACCACCCCGAGGTCACCAACGTGCACTGCTACGGAGAGGACCGTCCGCAGCACCGAACGCGGTTCAGGGTCGACTTCGCGAGCGGCGCGGCCGCCTATCTCTACGTTGACGACGTGGGGGCCGGGAATCCCGCGTATGGCTGCTGACTCGCCCGAGGTCCCCCGGGAGGCGCTGTGAGACTCGATCGTTTTCGTGAGTTGCTCCGCGAACAGTTCGCGGCTCACCCCGGCATAGCCAGCATCGAGGAGTACCAGGTTCCCTCGACTACCGGCT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 166735-167029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000009.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 166735 30 100.0 35 .............................. AGTGTGGACATGAGGGACCTCCAAGGACGAAGAGG 166800 30 100.0 34 .............................. CCGTCGTAGCGCTCCCGCTGACGCTGCCGCACGG 166864 30 93.3 38 ..................G.T......... ATGTCCCGGGGCCAGCAGGCCCGGGTGAGGCCCGCCGC 166932 30 100.0 38 .............................. ACCATCCGCACGCGGACCAGGCCATCCCGGATCATCGG 167000 30 80.0 0 ...............G....C..C.A.TG. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 94.7 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : GGGTCCAGGACCCGTAGAGCAGCACGCCGTCGAGCCGGGGCTCCGCGTGCGCCACCTCGCGCAGTCGGTCGATGCGGCGGGCGAGGGCGGTCGGTTCGGTGTGGGGCATGGTGGGACTCCTCCCTGAAGTGGACGAACGGGCTCCCACGTCCGGCCGGAGACGGCCCACGGACGCGAGTGGTGGTGACGGTGCGGAACCGTGTCCTCAGGAAGTGCTCATGCGCGGATGGTATCGAACGAGCGATGGGGGAGAGGTGGGCGACCACTACGCTTGAGGCGGTCGAGCACCGGGGCCGATGGGCACCTTCCCGGCGGCCTTCGCCGGTTCGGCATGCTGATCTGGTGGTGTTTCGGGCCGCCGGAAGGCTGGGGAGGAGGCACCATCGAGTGAGGCGAGATTTCAGCGAACCCCCCGGGTCTGATGTCAAACCTCGGGTTCGCTGCAGAACCGTGTCCGATAGGGTGGTCCAGGCGCCCGCTGACCTGCGACTTTACTCTCG # Right flank : CTGTCAAGGGCCTCGGCCTGTGGTGCTGCCGTCACGGGCGGGGTGGCGCAATCGCACCAGCTGGCCGACGACGAGGTGTCAGTTCGCGTTGCACCTGCTCCTGCTCGGGAATGAGCACCTCGGGCTGACATCGCCAGATGCTCGTACACCCGATGCCCGGTCAGTGAGGCGCCGGGAGGGACTACTGTGGGAAGCGGCCCCGCCACTGTCAGCGAAGGGGACGTGCGGTGAAGCTTGAGGACGACCTCATTGGCACGAGGATTCGACAGATCCGTCACTACCGTGGCATGACCGCGTCAGCGGTTGCCGGGCTTGCGGGTATCAGCAGGTCCTACCTATCACGCATCGAGCTGGGTGGCAGGGCGGTGACGTCCAGGTCGTTGCTGGAAGCGATCGCCACAGCGCTCCGCGTCGCACCGTCGGCACTCACATCCGAGCCGCACAAGACACTTCGACGAGGTGACAACAGCGCTCACGATGTCATCCAGGCCCTGGACGCG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 174545-174936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000009.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174545 28 100.0 33 ............................ GATGAACGGCCGCAGCCTGGAGACCACGAACGC 174606 28 100.0 33 ............................ GTCCGGGCCGGTCCTCGACGGTGCAGCGCTCGC 174667 28 100.0 33 ............................ GTTGGGCTTGGCCGTCGTGATCCTCGTCCTGAA 174728 28 100.0 33 ............................ GCTCGTGAGCCTGCCCGTGTGGCTCGTGATCGC 174789 28 100.0 33 ............................ GTGGTCCGACACGTTCGCCGGGCTGATCGTCTC 174850 28 89.3 31 ........................CCG. CCCCACCGGGGCACCCGTCAGCATCGTGGTG 174909 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : TGCTGACCCATCTGGTCTGGGTGTGCGCGGTCGCGTTGGTGTCGGTTGGCGCACTGTTCCTGGTGGGCATCCTGCTGGGGTTGGGTCCTGTCAACGGCGACGTGCTGGCCGACTTCACCCGGCTGGTGCTGTTGCTCGTCCTGACCGGTGCCGTGGTGGTCCCCACGTCCTTGGTGGCCACCCTCGGCCGAGGGGCACTTCCCGGGATAGGGGCGGCCATCGCCCTCATCGTGGTGTCCCAGGTGGCGGCGATCGTGCAGCCCGCAACGGCCGCGTGGCTGCCCTTCGCGGCTCCCGCGATCTGGGCGCTGTTCCCCGAGGTGGTGGGTATGGCCCAACTGGGGCTCGTCATCGCCACCAGCGCGGTGTTCTGCGGTCTCACGGTCCACGTGTGGAACCGCTTGGAGCTGGACCGAGGAGTGTGAGCGGGAGTACGGTGCCGCCGGATCCGTCTAGGTCAAGAAAAGGTAACGGGCTCCCGTCGGCGCAGGTCGCGAAGG # Right flank : CCTGGATCCAGAGCTTCGGCCGCGCCCTGGACGCCACCGCCGGCGCGGCACCGCTGCTGCTGCTCGGCGACCTCAACGTGCTCGAACCCAGCCACACGCCGGCTCACGGGGGCCAGTTCGCACCGTTCGAGTACGCCTTCTACAGCGGCCTGACCGACCGGCACGGCCTGGTCGACCTGTTCCGGCACCTGCACCCCGACCGGGTCGAGCACAGCTGGGCACGCCGTCCGGACCTGGGCTTCCGCTACGACCACGCCCACGGCTCGGCCGCCTTAGCCGAGCAGCTCACCGGCTGCGAGTACGTCCACGAGACCAGGGAACTCGCCGGGGACGGCTCCCGGCTCACCGACCATTCCGGGCTCGCCGTGCGTCTTGCGCTGACGCCACCGGCGCGCTGCTAACGTCGGACCCCGCCACGGCGGCCACGCCTGCCGAGCCGGAGCCCACCCTGTTCTGACCGGCCGGTTCGCGTCTCGGCTGCCGGAGCGCACGCCCCGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAAGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 214190-213898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000009.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 214189 30 100.0 37 .............................. ATGCACTCCCACGACCCGCTCGAGTTTCGGACGGAGG 214122 30 100.0 34 .............................. TGGCTAAGAACCGCCAGGGCCGGACAGGGTCCGT 214058 30 100.0 36 .............................. CGCCCATCTCTGCGGCGAACTCACGGGCGTTCGCGG 213992 30 100.0 35 .............................. GCGTACCTGTACGCGGCGACCTGAAGTGCGGTTTC 213927 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Left flank : CCGAGGTCCCCTTCGCCGCACGAACCGGCCGCTGCCGTACGCCAGCGTAGGCTTCTCCCATGCTGGTGAGGACCATCCGATCCGGTGACTCGTTCCTCTGCTGGCGGCCAGTCGCCAGTTCTGTTGTGGACACCGACGGTTGGCTGCTCGTGGAGCAACCAGTGCGGCGCGGCACAACGCGAGGTGGAGCGGACGACAGCGAGGCCCGCTCCGGGAGCTGCCCGTCGCTGCGAGACCGTCACGACGCGAGCCTTGCATGCGCTCGCCCGGCTGCCTGTGTCGCGTGGCCCGCGGCACCCGCCCGCGAGCTCGACATCCTGCGGAGGCCGGGGGCGGGCTGACGGCCGGGCACCGGGCGGGTTGGGCGCGACGCGCACGGTAGGCTTGCGCACGGAGATTTCAGCGAACCCCCCGGGTCAGATGTCAAACCTCAGGTTCACTGCAAAAGCGCCGCCAAAAGCACCGTGCAAGAAGGCCCTGACCAGCGACTTTACTCTCGC # Right flank : AGTGTCGATGCGGCCCTGCACAATCGGGTGGCAGCCCATTCACGCTGCTCCTAAGGAGTTTCAGGCAACGACGAGTGAGGAGATGCAGCGGTGGTCTCCACTTCCCGCACATCACACGATGACCACGAGCAGGTTCACACCGTTCTCATCGCCCGGGAACGGGCCATCCGGGACAAGGATGTGCTGGCGTCGTCATCGGTATACGCGCCCGACGTGACCGTCTTCGCTCTCGCGCCTCCGCTGAGCCTGCGAGGACAAGCCGCGTTCGATGAGGCGGGAACGCGCGCCTGGTACGACTCCTTCACCGGACCCATCGGTCGGCAGCGGCGTGATCTGGTGGTCGAGGTCAGCGGCGACGTCGCCTGTGCCCACTGCCTGGTCCATTTGACCGGGCGACGCACCGACGGCGCCGAGACAGATCTGTGGTTCCGAGAAACCCTCGTCCTGCGCCGCCACGGCGACACCTGGCTGATCAGCCACGAGCACGCCTCGGTACCCCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCTCCTACGAGGAGTTCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 46727-48456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000010.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 46727 37 100.0 35 ..................................... GACAGCCATCCCATGTTCGCGTCCTCTCAGGTGTG 46799 37 100.0 40 ..................................... ACGAGGCTGTCCGGCCGCGCATTCGGCCGGCGGCGCCGGG 46876 37 100.0 35 ..................................... GCGGCCTCGGGCGGTGAGCCGGGGGACCTCGTCTA 46948 37 100.0 37 ..................................... GACCATCTTGCTGCGGATCGTCGAAGCGGTGACGGAG 47022 37 100.0 38 ..................................... AGCGCCTTCAGAAGGGCGGCCAGCACCGTCCGGTGCTG 47097 37 100.0 38 ..................................... CAGGACGGTGACGCGGATCCCGATGTCGAGGGCCACGG 47172 37 100.0 37 ..................................... TTCGTCCGTCCGCCGGTAGCGGCGGACGGGGGTCCGA 47246 37 100.0 35 ..................................... AGATCCAGTCCGGGTGACGCCGTCGTGGCACACGA 47318 37 100.0 36 ..................................... ACGTTGCCGCGTTGGTGATCGACGCGGCACGTGATC 47391 37 100.0 36 ..................................... CCGACTACCCGCAGCACAACGTGCTGCACGCCTACC 47464 37 100.0 38 ..................................... CTGCTCATCGTGGCGCTGACCGGGCTCTACCTGCTCAT 47539 37 100.0 39 ..................................... CACCCGAGCTTGCCGGCCGTGTTGTGCAGGTCCACGCCG 47615 37 100.0 37 ..................................... GAGGACCAGGCGGAGCCGGGGCGCGGCCGGGAAGCCG 47689 37 100.0 37 ..................................... CAGTCCAACGCCTGGGTGATCTCGGCCGTCCGCCGAG 47763 37 100.0 35 ..................................... AGTGCGGGTCCGAGCACGCTGGCCGTGTCCGCGAT 47835 37 100.0 36 ..................................... GGCGGCCAACTCAACTTGGCGGTGCTGGTAGGCCGC 47908 37 100.0 37 ..................................... ATGCGTGGCGAGCCGTGCCCGTCCGGACGAGTCCGGA 47982 37 100.0 36 ..................................... CAGATGGCGTCGATCTCATCGAGGAGGATCGTCGGG 48055 37 97.3 37 ......T.............................. CGCAACTCGCACACCGGGTCACCTGAAGCGGTCGCGG 48129 37 97.3 35 ......T.............................. CCGGCTCCCTCCCTCCTCCTCCGTCTCCGACGCGG 48201 37 100.0 36 ..................................... ACCCCGGTGGACATGGACCCCCAGGTTGACGGAGAC 48274 37 100.0 35 ..................................... GGCATCCGGTCCGGTGTGTCCGGGTCCTGTGAGGA 48346 37 100.0 38 ..................................... CCGTCCTGGTCCCGGACCACCGGGTCATATCCAAACAG 48421 36 97.3 0 ................-.................... | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 99.7 37 GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Left flank : GAGGGTCAGCGGCGGCTGCGCAGGGTGGCGAAGATCTGCGAGGGCTACGGGCACCGGGTGCAGAAGTCCGTCTTCGAGGTGGTGTGCCGGCCGCAGGACTGGGTGTTGATGAAGCACCGCCTGGCGGAGGTGATCAACTCCGAGCGGGACAGCATCCGCGTCTACCACCTCGACCGGGGTTCGTTCTCCCGCGCGGAGCACATGGGGGCGTCGCGGCTAGCGCCGCACGAATCGCCTCTGGTGTACTGACGGTGCTTTCCGGAGACTGGACAGGAAGGGCAGTCGTGACACTGAATTCCGCTGGTTCACTCGCAGGCCGGCCGAGCCGGCCCCAGGGTGGTGCGGATCCGCGCCGTGTGCGGTGTGGAGTTCGCGCGGATCGGAAGCGTCACACGACACGCCTGGACTCTCCTAAGCAAATCCCGGGCGTGTCGTCATCTTTGTCTGGTTTGCGGGAAGCTCGTCGCAACACGAAATGGGAAAACCGCTGTTCACGCAGC # Right flank : CCTGCTGATGCTGCCTTGGTGACTACCAGGGGCGCGCGTTGCGCCGGTCTTTTTCCTGACGGGACTGCGAGGCTGCGAGGCGCCGGGGCGCCCTCCGAAGGGCACGACCCGGAGCCTCGCGTGTTCCTTCGTGCGGATCGTCGTAGGCGTCAGACCCCCTCCGCTGCCCTCGCGATGACCTCGCCCGCCTCCTTCGGCGGGGTGACCTGCGGATCAGCGGGAAATGCGGCCGAGCAGGGGGAAGGCAGAACGCACACGAACTGATCGCCACCCACGACCACGGTCACCGCTTTCCCGCCCAAGGCGGGCAAGGTGCTGACCATCAGCGATGCCACGGGTTCCGGCCCAGGCACGATCGCCGTCACGACCGCTTCCCCGTCCGCCACCAGCAGGGCACCCGCGACCCGTCGGGCCTGCATCACCGGCAGGCCCACGGGTTCCTCGGGCGCGTGCTCGGGGCGCAGGACAACGCCGAGCCGGCTGGTCTCCACCAGCACGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGGCCTCCGGGCCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 180348-180076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000010.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180347 28 100.0 33 ............................ GCGGTTCGCTACTGACCTGCCGAGGATGACGCA 180286 28 100.0 33 ............................ GATTCGGGAGGACCTCCCGTAAGAGGAACTGAC 180225 28 100.0 33 ............................ GACATCCCGCGAGGCCGCCGTCGCGGACATCCG 180164 28 100.0 33 ............................ GGCGCTGCATCACTCGCACGACGTTCGGCATGA 180103 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GGATCGGCCCCGAAACCGTGATCGCGACCACCGTGCATGCCCTCCAGGTCGCCGACGAGGACCTTCCCGAGTCGGACCACGACTTCAGCGTGGACCTGATCGCCACCCCCGAGCAGGTGATCGAATGCGGCCCGAGGCGACTCCCGGCGGGCCTGATGTGGGAGCGGCTTCCCGCCGAGAAGATCGCCGCCATCCCGGTGCTGCGACGGCGCGCCTCGGACCGACGGAGCGGCCCCGCTGGCCCGGGCGACGGACACCGACCGGGCCACGGATGAGAACGCCCATGACCGACGAGGAGAAGCGTGTCGGCTCCCTGGCCGAGGGGAACGTGACGCAGGCGCGCAAGCGCATCGCGGTTGGCCTGCTGAGCCGCGACGAAGCTGGTCGTCCTGCGCTGGGAGCGAGACGGGGGGCCTACCCCGTTCGTACGACTCCGGGAATCCACACCAACAGAAAATCACAGAACGGTAACGAGCTAACATCAGTGCAGGTCGGGAAGG # Right flank : GGGCTCCGCCGGCTTCCGGGAGTGCGGGGCGTCCGACGGGCTCCGGCCTGAGCGTGCGCCGCCAGCGAAGCTCGCGTGCGGACGAAACCTGTTCGCTGGTCGGGCTCAGGACTCGGGCGCCCTCCCCCACTCCCCAACACGGGGTCCACGTGGTCGATCAGGACGTCACTTCCCGGTCCCTTCTGGCCGCCCAGAGCAGGACGGGCACCAGCAGGAGGGCGAGGAGGCCGCCGGCGAGGGAGAGGACTTCGTAGCCGCCGGTCGCCATCACCACACCGGACATCGCGCCGCCGCCCGCTCCGGCGAGGGAGACGAGCACGTCAATGCTCCCCTGGGTTCGCGGCCGGTTCTCCGGGACGGTCGCGTCGACGACCAGCGCGGTGCCCGAGATCAGCCCGAAGTTCCACCCTAGCCCGAGCAGGACCAGTGCGAGGATCAGCGGGCCGAGCGAGTCCCCTGGGGCGAGCGCGGCGACCACTCCGGCGGCCAGGAGGGTCACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 197624-198020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JODV01000010.1 Actinoalloteichus cyanogriseus strain NRRL B-2194 contig10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 197624 29 100.0 33 ............................. AAGTCAGGTTCGGGCGAGCACGGCCCGTGCGGT 197686 29 100.0 32 ............................. ATGGTTCTGGACGCCCAGAACTTCCAGGACCT 197747 29 96.6 32 ............................T CGTCCTAGACGACCAGGACAACGGTTCGTGTT 197808 29 100.0 32 ............................. CGCCAACCCGAACTTGGGAGTCCGCTGGGGGA 197869 29 100.0 33 ............................. GTGGCGGCCAGCTGGAGCAGGCCTACGATGTCG 197931 29 96.6 32 ............................T CCACGTCCTCCGGTGCCGCGCCGAAGAGCGTC 197992 29 93.1 0 ........................C...T | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.0 32 GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : CGACGTCCCGGCGAATCGTCCGCTGATCGACCTCCAGGAGTCGGGCGAGTTCCTCGCCGGAGACGGGTTGCCCGTTCCGCAGGGCTGCCAGCAGAGCGAGGGAACGCTGGGTCACATCGGCCACGAGCCCCAGTGTTGCCGAATTCAGGGCAGTTCCTGACCTGAATTCGGGATCGGATGGTCTGCGGACGTCGGAGGGCCGCCGTTATCTGTGGTCCGCGCCGCCGAACGACGGGCCGCTCCGGTCGCGTGCGTCGGTGGTCGTGCGGGCCCGTCTCCGTGGTTCGCCGTACGAAGGGGAGAGAACTCGCAGGTCGGGGATTGTGCGGGGGAGTGGGTGACCGCAGGGGAAGGCGGGAGCGGCCGTTGTCGTGGATTTTCCACCAGGTATGGCGTGATGTGGTGGAAGACGGGAATTGCGGACAGTCTCGATGCGGGAGACCGTCGGGAAAGTGAATGAGAATCGGTCGTGTCGCTCGTAACGCCGCAGGTCAAGAAGT # Right flank : TCACGTGACGAGCGCGACCGACCTCTTGGAGGTGGAGGAATTCGGTGTGCGGCGGGGGTGCCGTTCGCCCGGAGCACAGGTAACACCAGGGAGGCGGCTCCCGAGGTCGCGTCGCCGTCCCGCCTCAGCTCCCAGCGGTCCAACGACTGGGTGACCAGCTCGGGAAGCGCGGCCAGCCAGTCCCTGCCGGCCTCGCCGAAGGCCCGCGCGTAGGAGACGACGAGGGGTTCTGGGACGTGCACCGCTTCTCGCGCACTCATGATGGTTCCTTCGCAGGCGGTGGTTCGTCCCGGGTCCGTCCGAGGGGAACGATCAGTATCGGTGGAAGGCCGCTCACGCAACGTGGCGGCGGGTGGCCTCGGCCGTGTCACGCGCCCCGGGTCAGCAGGGCACGTCGAGCCTGCGTTCCAGTTCCGCCATTCCGGCCCGGCACTCCCTGGCCAGCGCGCGGTGCCCCTGGAACCGGCCGAGGATCCCGAAGGGCCGCACCGACGCCACGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : GTCGTCCCCGCGCACGCGGGGCTGTTCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //