Array 1 860658-859687 **** Predicted by CRISPRDetect 2.4 *** >NC_014738.1 Riemerella anatipestifer ATCC 11845 = DSM 15868, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 860657 47 100.0 30 ............................................... TTCTTAATTGTAATGCTTTAGAAAGTAGTT 860580 47 100.0 30 ............................................... TATCCCATCGCACATCTGTTTTATTTTGTC 860503 47 100.0 30 ............................................... TTTATTAAATAATTTAATTAGCTGAAAATC 860426 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 860349 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 860272 47 100.0 30 ............................................... TTTCAAGGCTTCCATATAGTTATTCATTGC 860195 47 100.0 30 ............................................... CACAGGCAGCTCTTGAAAGCGGATGGGGGA 860118 47 100.0 30 ............................................... TACACCGAACAAACTATAAATAAACATTTA 860041 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 859964 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 859887 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 859810 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 859733 47 91.5 0 ........T...............G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 2 1694512-1696876 **** Predicted by CRISPRDetect 2.4 *** >NC_014738.1 Riemerella anatipestifer ATCC 11845 = DSM 15868, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 1694512 36 91.7 30 .................G.....TG........... ACTAGTAAAATAATAACGATATGAGAAATT 1694578 35 83.3 80 ................-.....CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [1694603] 1694694 35 83.3 79 .......G........-.....TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [1694719,1694726] 1694810 35 83.3 79 ................-.....TA..T.T...G... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT CT,A [1694832,1694843] 1694927 35 83.3 79 .......G........-.....TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [1694952,1694959] 1695043 35 83.3 79 ................-.....TA..T.T...G... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT CT,A [1695065,1695076] 1695160 35 83.3 79 .......G........-.....TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [1695185,1695192] 1695276 35 83.3 79 ................-.....TA..T.T...G... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG CT,A [1695298,1695309] 1695393 35 83.3 82 .......G........-.....TT....T...G... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT C,A [1695418,1695425] 1695512 35 83.3 81 .....T..........-.....CT....T...G... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAA C,A [1695537,1695544] 1695630 35 86.1 81 ................-.....TT....T...G... TCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA T,A [1695655,1695662] 1695748 35 83.3 80 .......G........-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC C,A [1695773,1695780] 1695865 35 86.1 80 ................-.....CT....T...G... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT T,A [1695890,1695897] 1695982 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 1696048 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 1696114 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 1696180 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 1696246 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 1696312 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 1696378 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 1696444 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 1696510 36 100.0 30 .................................... TAAGAACTTTGTAGATGAAAGTGGTAATCT 1696576 36 97.2 30 ...................C................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 1696642 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 1696708 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 1696774 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 1696841 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 27 36 91.5 53 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : CTTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGT # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-1.52, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [69-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //