Array 1 21130-19638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUQ010000008.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22093 FAM22093-i1-1_scf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21129 28 100.0 33 ............................ CTTACCAAAAAATCGACATCGTAGGCGAACACA 21068 28 100.0 33 ............................ TACCAATAATTTCTCCGAACTATCTAACGCTTG 21007 28 100.0 33 ............................ TTTTTCGTGCTTAAGTCGAAAGACGACTTTGAA 20946 28 100.0 33 ............................ TAAAGACAGTCAAGCAAGCGAAAAAGAGCAAAA 20885 28 100.0 33 ............................ CACCGTTTCAAAATACAGCCCCTACTTTAAGGA 20824 28 100.0 33 ............................ TAACCGACTTCGCTTAAAGCCCCGGCATCAAAC 20763 28 100.0 33 ............................ TTAAGCGAGTTCGGATTAGTGAAAATGATCGAT 20702 28 100.0 33 ............................ CCACCTCTTTACTCACGCGTATCACTTCGCCCG 20641 28 100.0 33 ............................ TAATTGCGGTGGGTTAGCAAGTGAGCACTGCCG 20580 28 100.0 33 ............................ TTTCGCAACCAGTTCAAAGGTATATCTTGAAAG 20519 28 100.0 33 ............................ CTTATCACTGTAACTATTGCGGGCGCTATCACG 20458 28 100.0 33 ............................ TAAGCAGCTCAAAAAACCACTAGATTTAATCTA 20397 28 100.0 33 ............................ TAACCTCATCATAGTAAACTTCTTCGTTATTTT 20336 28 100.0 33 ............................ CACTGCTTCTTCCTTGGTCAAAGAGTGGAAAGA 20275 28 100.0 33 ............................ TCGGCCCCGTCATGATCAAAGTAGTCAACGTGA 20214 28 100.0 33 ............................ TTTTGTAGCTATCGACTTGAAGACCTTGACGGA 20153 28 100.0 33 ............................ CTCTTTTTGTGTAGTATGTAAAAGTGTAACACG 20092 28 100.0 33 ............................ TGTCCATCCGTCTTTGACCATGCTCAAGGCTTG 20031 28 100.0 33 ............................ CTTATTGCCTACTGACCAAAGAGAAGTCGATCA 19970 28 100.0 33 ............................ TAGTATCGACGGTTGGACTACGGACGACGAAAA 19909 28 100.0 33 ............................ TCCCGGACTGCTTCATCCTCAGACGTCCATAAA 19848 28 100.0 33 ............................ TGATATTTTACCGCTAGCCCTTGATCATGTCAA 19787 28 100.0 33 ............................ CTTTTTTTGAAAAATCTATAGCGCCTTGCAAAT 19726 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 19665 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : CTTTACATCAACATCTTTCAGAAAGCTATCTTCAGTATTCCCCACGCAAGTGGGGGTGATCCCCAGTGCTTCTTGAGCGACGATGCAGACGCCAAGTATTCCCCACGCAAGTGGGGGTGATCCTCCAGACGCTGAAGACACGACGCAGGCACGGAGGTATTCCCCACGCAAGTGGGGGTGATCCTAACACAATCGTCTTCGTCTCCGATGCTGATCTGTATTCCCCACGCAAGTGGGGGTGATCCTCCAGACGCTGAAGACACGACGCAGGCACGGAGGTATTCCCCACGCAAGTGGGGGTGATCCTAACACAATCGTCTTCGTCTCCGATGCTGATCTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACGCAAGTGGGGGTGATCCCCAAAGCTTGGAAGCTTTAAACACTAGATACAT # Right flank : GTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27086-21324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUQ010000008.1 Lactobacillus delbrueckii subsp. lactis strain FAM 22093 FAM22093-i1-1_scf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27085 28 100.0 33 ............................ TGATTTCCATGATTATTTCTCCTTTGATTCTAA 27024 28 100.0 33 ............................ TCACCTGCTTGGTGTCGATAGCCGTCCGCAACA 26963 28 100.0 33 ............................ CCCCGAAAAAGATTGATCTAAAGCCGTTTCTAG 26902 28 100.0 33 ............................ CTCGAAAAAATTGATCTAAAAACCCCGAAAAAG 26841 28 100.0 33 ............................ CGTATTGAATTACGCTCAACAGGTGGCTGATGC 26780 28 100.0 33 ............................ CTGCCGCCAGTGCCCGGTCGTAAGAGACAGGCG 26719 28 100.0 33 ............................ TGGTACTCCATGGTATGGTCCTGTAATCGTAAG 26658 28 100.0 33 ............................ CCTCAACTGGGCGGTCGAAGGTGCTATCAAGTA 26597 28 100.0 33 ............................ CCTTGTTGAAAGCAGCCCAGGACCAGGGCTTTA 26536 28 100.0 33 ............................ TCGCATGCAACGGGCTACTCAGCAGGTTGGCTA 26475 28 100.0 33 ............................ TGCAAGCGTAAAAGCTAACTTTTTTTATTTTTT 26414 28 100.0 33 ............................ CGTTTTTGACATTCTTGACGGGGCGCGACTGGC 26353 28 100.0 33 ............................ TAATGGGGTGACTACAATTAGCAAGACACCTAA 26292 28 100.0 33 ............................ TCGACGAAAAAATGGTTTATGGGGCGGTAGAAA 26231 28 100.0 33 ............................ TGACATTCACGATAAGCCAGAGTACAACATGGA 26170 28 100.0 33 ............................ TATTTCGGTGAATTGCTCTCCCCAAGTGCACTA 26109 28 100.0 33 ............................ TCTATACTGATCCCCGGCCGCCTTGCCTGCTAG 26048 28 100.0 33 ............................ GCAATGAAAGGTATATAATAGACGTATAGGTTA 25987 28 100.0 33 ............................ AGATTGGATTGAGCGGCAATTTGCAAGCAATGG 25926 28 100.0 33 ............................ TATTGGAGATATTTTCTTGAGCGTCCTGAACTT 25865 28 100.0 33 ............................ TAGCATTGTTAGCTTTGAATGCAAGCTTATAGA 25804 28 100.0 33 ............................ TACGCCAGCTGGCGGCTGAAAGACATAAAGCCT 25743 28 100.0 33 ............................ TAATCGATGCCTTTGTCAAACTCAAAGCATGTT 25682 28 100.0 33 ............................ TCTTATCAGCTTCGATACTATCAATCATTGCAG 25621 28 100.0 33 ............................ TATCTATGCCATTTCCTCTCAAGATTTTGGCTA 25560 28 100.0 33 ............................ TCTTTGGTGTCGGTCAAATCAGCTTCAATCAAA 25499 28 100.0 33 ............................ GGTTTTTCTCATCACCTCGTCAGTCCCATAATT 25438 28 100.0 33 ............................ TGATCTTGGCAAGCACCCCGATCAAAATTGTGG 25377 28 100.0 33 ............................ TCTCGACCAGCTGGGCCTTTTGCTCTTCGTAGT 25316 28 100.0 33 ............................ TAACCTGGGCGGGCGTGGTTGCGTCAATAGCCT 25255 28 100.0 33 ............................ TCTATACTGATCCCCGGCCGCCTTGCCTGCTAG 25194 28 100.0 33 ............................ TCAAGTATCCATTTTCACGCAGCCACTTAAAGA 25133 28 100.0 33 ............................ GTTTGTACCTGCATGGTTAGATACAATCACAAA 25072 28 100.0 33 ............................ TGCAGAAGATTGCAGCTGAAAATAGCGAGGAGT 25011 28 100.0 33 ............................ CAATTCGTCATGGACCTTAAGGCTTTGCCGATG 24950 28 100.0 33 ............................ CTGTTTGCTGAAATATGTGGTGATTTCTTAGGT 24889 28 100.0 33 ............................ CTAGTGTAAGGCGGTATTTTTATATATAGAAAA 24828 28 100.0 33 ............................ TTGAGTTTAAACTTTTGATAGCCGCCACCGATC 24767 28 100.0 33 ............................ GTATGGAAGTTGCCAATACTTTTTAGCATTGAA 24706 28 100.0 33 ............................ AGCATACCATACGATCAATACAAAGCGTGAACG 24645 28 100.0 33 ............................ CCTACATCGATGCGGGCAGAATTGAAACGGATG 24584 28 100.0 33 ............................ TTTCCCGCCAATCCTTAACGGTCATGGTGTGGG 24523 28 100.0 33 ............................ TAGACACCGTTTCGCCTCCTAAGAAATAACCTA 24462 28 100.0 33 ............................ CTTATTGCCTACTGACCAAAGATATGTCGATCA 24401 28 100.0 33 ............................ CGTGCTTTTTGTTTACAGTCTTATATTAAATAA 24340 28 100.0 33 ............................ TCAAAGCGGGGAACTTTGACGCCGTAGAACTTG 24279 28 100.0 33 ............................ TTATTAGCGTTGGCAAAATCTGGTAGCTGATAG 24218 28 100.0 33 ............................ CAAGTCGCTCGTGGTCACAGCCATGTTTGAGGA 24157 28 100.0 33 ............................ CTCACAGCGGGCATAGCTATCAAACTTGACAGG 24096 28 100.0 33 ............................ CAGCTGGATGAGATTATCACGGCTCTCCAGCAG 24035 28 100.0 33 ............................ TACTTTCCTCACCTCCGTGGGGCTAAGCGGATC 23974 28 100.0 33 ............................ CTACGTAACTAAAGAAATTGGCAGCTTCATTTG 23913 28 100.0 33 ............................ CTATGGACAAACCGCTTTCACTTACTACTCTGA 23852 28 100.0 33 ............................ CGCAAGCAGAAAAAGCGTTATGCCGCGACTTGA 23791 28 100.0 33 ............................ TGTGGTTCATCTAGTTCAGAAGCATTAAGAATG 23730 28 100.0 33 ............................ TTCAGTATTTGGATGGCGTCTATTATATCCGCT 23669 28 100.0 33 ............................ TTTGTTGATGTCGGAATCCGGGTAGATGTCCCA 23608 28 100.0 33 ............................ CTGGTCTTTGAAAGAGTATCTCAAAGATACATG 23547 28 100.0 33 ............................ TCATAGCACCTTTAGGGAAAAAAGCAACCCCCT 23486 28 100.0 33 ............................ CAATTTTTCGATCTTGCTGTAAAAGCCATTGAG 23425 28 100.0 33 ............................ TATCGCTTCCTGGGGCGTTTTAAGCCCCGTTGT 23364 28 100.0 33 ............................ CTGTTTGCTCTAGTCCAGTGGCTGTTTCTTTGA 23303 28 100.0 33 ............................ TATTGTTTTTATTATCAGTCACCTGAGACTGCA 23242 28 100.0 33 ............................ TCCGGTGTCTTTCCAGCGTGACCACATCGTTTA 23181 28 100.0 33 ............................ TTTAGCGATTTCACGTTCTTTCGCCGCCACCAG 23120 28 100.0 33 ............................ TTTGTTGATGTCGGAATCCGGGTAGATGTCCCA 23059 28 100.0 33 ............................ TACTAATTTCATCAACTCCCAAAATTTCTGCTA 22998 28 100.0 33 ............................ TTCTCGGTTTGGTCTTTGATAATCTTATCAAAT 22937 28 100.0 33 ............................ CGGTAGTAAAAGTTTCTAGGATATCACGGTTTA 22876 28 100.0 33 ............................ TCTTACAAGGATCTAGTAGACCTTGCAATCGAA 22815 28 100.0 33 ............................ TTTTCAGAGGAGTAAAAGCTGTAAAAAAGGGCG 22754 28 100.0 33 ............................ TCGTCAAAGTCTTTGATGAGACCATCAAGGACG 22693 28 100.0 33 ............................ TTTACATCAACATCTTTCAGAAAGCTATCTTCA 22632 28 100.0 33 ............................ CCAGTGCTTCTTGAGCGACGATGCAGACGCCAA 22571 28 100.0 33 ............................ TCCAGACGCTGAAGACACGACGCAGGCACGGAG 22510 28 100.0 33 ............................ TCCCAGCTTGATTGTTCGTGACACTGGCACTTA 22449 28 100.0 33 ............................ TTTTTCCTTGTTGTCGGTTAAAACGAGTTTTAA 22388 28 100.0 33 ............................ TTTCTGGAGGAATCATCAGCAGCATCACGGTTG 22327 28 100.0 33 ............................ TTTGGCACACAAGCGAAACTCTGCTCGCTTCAG 22266 28 100.0 33 ............................ TCATAGCGCCTTTTGGATCAAAATGCAAGCCCC 22205 28 100.0 33 ............................ TTAACCACCATCAAAATCATCATTATTAAAGCA 22144 28 100.0 33 ............................ ACGATCGGTAAAACTCCGCTAAACGCTTGTATA 22083 28 100.0 33 ............................ CGTAGCAAGGTTTTACCATGCTTTCAGTTATTT 22022 28 100.0 33 ............................ ACGATCGGTAAAACTCCGCTAAACGCTTGTATA 21961 28 100.0 33 ............................ CCAAGATTTGATAAGTGTTCTTTCAAAACAACA 21900 28 100.0 33 ............................ TGTCCATCCGTCTTTGACCATGCTCAAGGCTTG 21839 28 100.0 33 ............................ CGTAGCAAGGTTTTACCATGCTTTCAGTTATTT 21778 28 100.0 33 ............................ TGTTCGAGGAGTTTTGCTACTTTATTCTGTAAA 21717 28 100.0 33 ............................ TGGAGATCGGCCGCCCGTCGGCCTCAGAGACAA 21656 28 100.0 33 ............................ TTTACATCAACATCTTTCAGAAAGCTATCTTCA 21595 28 100.0 33 ............................ CCAGTGCTTCTTGAGCGACGATGCAGACGCCAA 21534 28 100.0 33 ............................ TCCAGACGCTGAAGACACGACGCAGGCACGGAG 21473 28 100.0 33 ............................ TAACACAATCGTCTTCGTCTCCGATGCTGATCT 21412 28 100.0 33 ............................ TCCAGACGCTGAAGACACGACGCAGGCACGGAG 21351 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 95 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAACACAATCGTCTTCGTCTCCGATGCTGATCTGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACGCAAGTGGGGGTGATCCCCAAAGCTTGGAAGCTTTAAACACTAGATACATGTATTCCCCACGCAAGTGGGGGTGATCCCTTACCAAAAAATCGACATCGTAGGCGAACACAGTATTCCCCACGCAAGTGGGGGTGATCCTACCAATAATTTCTCCGAACTATCTAACGCTTGGTATTCCCCACGCAAGTGGGGGTGATCCTTTTTCGTGCTTAAGTCGAAAGACGACTTTGAAGTATTCCCCACGCAAGTGGGGGTGATCCTAAAGACAGTCAAGCAAGCGAAAAAGAGCAAAAGTATTCCCCACGCAAGTGGGGGTGATCCCACCGTTTCAAAATACAGCCCCTACTTTAAGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //