Array 1 538-2066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVJ010000018.1 Campylobacter concisus isolate 2010-113332-F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 538 37 100.0 37 ..................................... ATGATTAGTGCGTGACGGATATGGTTTTCACACTCGG 612 37 94.6 40 ......................TT............. TGTAAGCATTACCAAATTACCTAACTTTTTACCATATGAA 689 37 97.3 37 .............................T....... ATGATTAGTGCGTGACGGATATGGTTTTCACACTCGG 763 37 94.6 36 ......................TT............. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 836 37 97.3 39 ....................................G GTTCTATGCTTAAACGTGAACTCAAAGTTCTTCTCTGCT 912 37 97.3 43 ....................................G TTATTTTTTTCAATTTCTGCTTGCGCTTGCGCTTTAATTTTTT 992 37 97.3 38 ....................................G AATTTCTCTCCGTTTACGTTGCGCACCTTTTTCTTTGT 1067 37 100.0 39 ..................................... AATTCGTTAGGAAACGCTGGATAGAGTATGTGAAATATG 1143 37 100.0 34 ..................................... GAAAGATTTCTTGAACGCGATCTGGAATTTGACT 1214 37 97.3 40 .......................T............. TACATTGTAGTAGTTTCTGCCTGATGGCAGATAGTTTAGA 1291 37 100.0 37 ..................................... AGCGTCTATGTTCGTCCAAAATAACGCCAGTTCCAGT 1365 37 97.3 37 .............................G....... ATTGATTTCATCTTTATACACTGGTTTCCAAACCAGT 1439 37 100.0 40 ..................................... GTTTCGGAGTATTGAATAGTAAGACCTTTTTCCATAGCTT 1516 37 100.0 37 ..................................... ATAAATTTGCTCGCTTTTTTGTTGATAAATAGCCCTA 1590 37 100.0 39 ..................................... GAAACCTCATCCGTGAAAAAAACTTTCTCTGTAGTTTTT 1666 37 91.9 35 .......T..............TT............. TCGTAATAGTCGTTTGCATCTTCAAACCACCTAAA 1738 37 94.6 40 ......................TT............. TCTAAAGTTTTTATATTTTCTTCAAAACGAGCTGGATTAA 1815 37 100.0 42 ..................................... AAATTCCAAGTAGCACTAGCTACTATTTCTTGTCCTAATTTA 1894 37 94.6 29 ......................TT............. TCGATCAAGTAGCCACGCTCTACTAGCTC Deletion [1960] 1960 35 89.2 34 ....--...................T......T.... TATAGTAAAACGTCATAATTGAAGCCTTTATGTC 2029 37 86.5 0 .........................T.....A..GTT | C [2060] ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 96.7 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAACTCTTCGCGAATTTTAGGTATCTTTAAAGCCAGTTTATTAAATAATTTTACTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TACATTTATATGTAAAAACTACTTCATGTAAAATATCACTATCATTTTTTATATTTTTATTTTTATGGGCACATGTTGTCCATATTTCACTTTATAAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 194-1119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVJ010000020.1 Campylobacter concisus isolate 2010-113332-F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 194 37 100.0 41 ..................................... CCATATTGTTTTCGATCGCAAACCCACCCATTGCATTTGTA 272 37 100.0 33 ..................................... TAACAAATGAGTAATACTCTTCAAACCCAAAAC 342 37 100.0 37 ..................................... CTACGCCACTTTCAGCCAGTTTCTTGACCTCTGTCAA 416 37 100.0 40 ..................................... TGTAAGCATTACCAAATTACCTAACTTTTTACCATATGAA 493 37 100.0 34 ..................................... GAGTTAAGTTCAATAAAATATTCAATTTTCTCAC 564 37 97.3 38 ................T.................... TCGACTGGTACGTTATACTCTATCTCCTCTTCGTTAGG 639 37 97.3 37 .....................C............... ACTGCACGTATCCATGCTGTGCCACGCCACGCAAAAA 713 37 91.9 37 .......T..............TT............. TTTTTCTCGTCTTTTCTGCTCTGAAGATACGCAAGAG 787 37 100.0 36 ..................................... CAAGGTAGTATTCAGCTGTTGTTGATTTGTGATGAA 860 37 100.0 40 ..................................... TTGTCTTCATCTGAATTATAATAATTCAAATATTTATTTG 937 37 100.0 37 ..................................... AGTCCTGTCAGCTCAGTAAAGAAAGTACTGTTGATAC 1011 37 97.3 35 .....................C............... TAGTGTTCTTTGCTCCAGCCACTATCGCCGTTTAT T [1022] 1084 36 89.2 0 .....................C........C.-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 97.9 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTTTTAAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAACTCTTCGCGAATTTTAGGTATCTTTAAAGCCAGTTTATTAAATAATTTTACTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCTA # Right flank : TTCCATAATACATATATAAATTTAGGCCATTTCGCTTACATAAAAATTGTAGATCTTTTTGCTTTCATTTTTTGTGACGTATCTTGTCTATGTTTTATTTTAAGTTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAACAGCAAGAGATGTGATAATAGTGGTATCTATAAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGGAAAAGCGTTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGATCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTGGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTTAGCTTGGTATTTTTAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //