Array 1 1734148-1733044 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017532.1 Mannheimia haemolytica strain 1512 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1734147	    32	 100.0	    36	................................	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1734079	    32	 100.0	    34	................................	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1734013	    32	 100.0	    35	................................	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1733946	    32	 100.0	    36	................................	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1733878	    32	 100.0	    35	................................	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1733811	    32	 100.0	    34	................................	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1733745	    32	 100.0	    36	................................	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1733677	    32	 100.0	    34	................................	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1733611	    32	  96.9	    34	.....................T..........	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1733545	    32	  93.8	    35	G....................T..........	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1733478	    32	  93.8	    34	G....................T..........	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1733412	    32	  93.8	    35	G....................T..........	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1733345	    32	  93.8	    35	G....................T..........	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1733278	    32	  93.8	    37	G....................T..........	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1733209	    32	  93.8	    35	G....................T..........	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1733142	    32	  93.8	    35	G....................T..........	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1733075	    32	  87.5	     0	G.........T..........T.T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        17	    32	  96.5	    35	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 8.83
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCACCTACGCGTGGCTGCGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.30,-1.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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