Array 1 270863-271865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270863 29 100.0 32 ............................. GAGTGTCATCCGGCCAGCCCTCCTCCCCCGGC 270924 29 96.6 32 ............................C CTATGTACGCCCGTGGGTGGCTCCCCCTTCGC 270985 29 100.0 32 ............................. GCGATCAGCTTTGCCATAGACGTGGCCTGGGG 271046 29 96.6 32 ............................C CTATGTACGCCCGTGGGTGGCTCCCCCTTCGC 271107 29 100.0 32 ............................. GCGATCAGCTTTGCCATAGACGTGGCCTGGGG 271168 29 96.6 32 ............................C CTATGTACGCCCGTGGGTGGCTCCCCCTTCGC 271229 29 100.0 32 ............................. GCGATCAGCTTTGCCATAGACGTGGCCTGGGG 271290 29 100.0 32 ............................. GCGATCAGCTTTGCCATAGACGTGGCCTGGGG 271351 29 93.1 32 ..........................T.C CACGCCCGTGGCGGAGTCCGCCTCCTCCGTGA 271412 29 100.0 32 ............................. ACGTGGCAGAGCGAGCGAGATGCCGCAGAGCA 271473 29 100.0 32 ............................. TAGTCGTACATGCGTGCGTTGTTGGGGAGGCT 271534 29 96.6 32 ............................T ATGGGCCCGGTCGCGGTGGTTCGTGACGGGGC 271595 29 93.1 32 ..............T.............C GAGGCTGAGGTCTACCGGCTGCTCAAGAGCTA 271656 29 100.0 32 ............................. TCGCTGCGGACAAGGGGGACGAGGTACACGAC 271717 29 96.6 32 ............................C ATGGCGGAGATTTGGACGGTCTGGGATGCCGA 271778 29 96.6 32 ..............T.............. CCCGACATGCCACCTGGATCGGGGCCGGGCGT 271839 27 86.2 0 .....--................T....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.2 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Left flank : CACGCTGGGAGGATGACAATGAGGAGCATCAGCGGACACGGTTCGTGTTCGGGCCAAGTGAGAAGCGGACAAGCAGAGAGGACGCTGGACAAGACGCCGCCGCAGAGCAGCACTTCCCTCCGACGCTCCACCTCACCTACGTGGGAGGTGACAAGCAAACGCGTCACCCAGCAGGTCTTCTAGCCAATCCCGCAGGTCCAGCCTGGTGTCAGAGCTGAGGATCCAGGCGGTAGGGCCCTGCAGTCGCTCGCACCGCTCCGGGGGCAGCGGCTCAGGACGGGATGCATGATCTGATTCCGGGCCAGGCGGATGTCATCGGTTCGTTGGATGAAAGGGTTACAGTCAATCTGCCAGCTGAGTTTCGGCCAGATGCCCCTATCTCGCCGCGTAAGCGAAGCGAACACTCGAAGCAGGTAACGGCACCCAACATGAAGCACCCCACAGCTCAGCAACTAAAGGAAAACAGCACATCCCGCCGGCAAAACCGCAGGTGAACAAGT # Right flank : ATGGCTGCTCGGCGCGTCCATCCGTACGGTGTCGTCGACCCCGAACGATTGACCGTGGGAGGCGCGCCGAGATCTACAGCCTCGGGATTTCGCCACACTCGAACAGTAACTCGCGGCGATTGCCCTTACTGCTGACGTCCCAGACGATCACATCGATGGCAGAAGCTACCAATAGCCGGGCTCCTCGCGGTCTGATCGGTAGAGTTGTGCAGCGTGTCAGCGTCTTCGGTTCGTGTGCGTTTTGCTCCTTCTCCTACTGGGATGTTCCATGTGGGTGGGGCGCGGTCGGCTCTGTACAACTGGGCGGTGGCGCGACAATCCGGGGGCACGTTCGTGCTCCGCATCGAGGACACCGACGCGGCCCGTAACCGGCCGGAGTGGACCCAGGGCATCATCGACGCCTTGGCGGCGATTGGGATCAACGCCGCTGATCCGGCTTTTGAAGGGCCGTACTTCCAGTCTGAGAACGCCAAGCGACACAGGGAAGCGGCCCTGCGGCT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306179-304908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 306178 29 100.0 35 ............................. ACGATCAGGTTGCCGGGATTCTGCTTGGCGATCTG 306114 29 100.0 38 ............................. CTGACGGGGAACCAGAGTTCGGGGTCGTGGCCCCGGCA 306047 29 100.0 37 ............................. ACTTAGGCGAGCTGCCAGCCACCACGGCGTGGAGCCC 305981 29 100.0 34 ............................. GGTTGTGGCGGCGGCTGGACGAGGACCGGCTGAC 305918 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 305850 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 305782 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 305714 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 305646 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 305578 29 100.0 36 ............................. AGGTCAGGAAGGTGGGCTACTCGCTGCCCATCTCCG 305513 29 100.0 38 ............................. CTGATGCCCGCCTCCGAGAACAGCGTGTTCAGCTTGGT 305446 29 100.0 37 ............................. GGGCGTGCCCGCACGGCAAGGTGTTCGAGGGCCGCGG 305380 29 100.0 34 ............................. TCCCACACGTCGCCGGGCTGCGGCGGCCAGTGCC 305317 29 100.0 34 ............................. CCAGACGGATGGGAACGAGGGCCATAACGTGCCA 305254 29 100.0 34 ............................. GCCTTGACCGGCTTGCACTCCGGGCCGCAGGACG 305191 29 100.0 35 ............................. GCGTACACGCCGATCAGGTCCCGCCCCATGCCCCA 305127 29 100.0 37 ............................. GCCATGTCCCACATGGTCTGCCAATTAGGCTTGACAC 305061 29 100.0 35 ............................. GCGTGCTCCGTGCTGGCCCACTGGTGGTGGTGGCG 304997 29 96.6 32 .......G..................... CTGTGGTGCTTCGGCTCGATGCGCCTGTTCCT 304936 29 93.1 0 ...........T...........T..... | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 99.5 36 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : GGGTCGAGACCCCGAGGAGATAGGAGGTGGCGACCACGCTGATCAGCGCCTGCTCGGCTCGACGGCGGCGCTCCAGCAGCCAGTCCGGGTAGTAGGAGCCAGTGCGGAGCTTGGGGATGGCGAGGTCGATGGTGCCGGTGCGGGTGTCCCACTCACGGTTGCGGTAGCCGTTGCGGGAGTTGGTCCGCTCGCTGCTGCGCTCGCCGTAGCCGGCCCCGCACAGGCTGTCGGCCTCGGCCGACATCAACGTCTCGGCCATGGTCTTCACCATGGATCGCAACATGTCAGGGTCGCCGGTCTCGATCTGCTGCGCCAGCCACCGGGCAGGCGTCACACTGTTGTCTGCGGTCATCGCCGTTCTCCTTCTTGGAATCGTTGCTACGAAGGATCACGCGATGACCGTTCTCATTTCACGGCGCCACACCTGCTGACCAGGTCAAACTCGTACACCACTTCCGTGGACGCAACCTCGCATCAACTGCCCTAGGCGCAGCCTGGGG # Right flank : GCGATTTCGGTTGCGGCCGCTGTTGGTCGGTGATCATGAAGCGGTTCCTGGGGTGGGCGTACTAAAGCATGCGTGGCGCGTTTCGAGGGGCGTTCAGTTGCTGCAGGACAGTTTGGGTTTCGGGTGACGGGGTGGCGCCGAGGGCGTTGAGGCGGGTTTTGAGGTGGCGGGCGTGTTGGCGGGCTTCGTCGGTGCGGCCGAGGGTGGTCAGGAGGCGGATGGCGGATCGGGTGGCGCTTTCCATATCGGGGTCGAGGGCGCAGGCCTGGTCGTAGGTCTCCAGGGCGCGTTCGTGGTGGCCGGCGCGTTCGTGGAGGGCGCCGAGTTGGAGGAGGGCCTTGACGCTGGCGATGGTGAGGGGCCAGCGGTGGTCCTGGTCGAGCCAGTCGTATTTGAGGCCTCGGGTGAGTGGTCCGCGGCATAGGGTTGCGGCGGTTTCCAGGGCGGCGAGTTTGGCCTGTTCGGTGGTGGCGGTGCGGGCGTCGGCGAGGGCTTGGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 307927-307638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 307926 30 100.0 34 .............................. GACGACGTCACGGGGATGACCACGCCGGGTATCA 307862 30 100.0 35 .............................. AACACCAGGTGTTCAAGGGTCATGCCCTCGACGAC 307797 30 100.0 34 .............................. AGAATCTCCTGCTCGGTGGCCAGAGTTTCGAGCA 307733 30 100.0 36 .............................. CAGAACCCTCGCCATCAGTGGCAGTGTGAATACGAG 307667 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 35 GGCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : TGGCCACGACTGTCTACCATCGGGCGCTACGTCGGAAAGTCTCGTACGAGGAACTCATCCACCTCGAAGCCCTCAAACTGGTGCGGCTCTGCCTTGAGGACGCCGCATACAAGCCGTTCCGGCCCTGGTGGTGATCATGTTCGTCATCGTCGTCTACGACACCCTTGCCGAACGTAATCCCGCAGTCCTGCGAACCTGCCGCCAGTACCTGCACTGGGTTCAACGGAGCGTCTTCCAGGGCGAGCTCTCCACCGCGCAACACCGTAAGTTCATCAGTGCCATCAAAGGCCAGATCGACCCGAGCTACGACAGCATCCTCATCTACCGTGCCCAGGGTCCCCACAACATCCAGACCGACCTCATCGGCCAGGCCCTCGGTAACACCGATCCCGTCCTGTGACTACCCTTCTGACCTGGGCATCTGCACTACCGGCGGACTGCTGCAAAACACCTCACGTGGAAGCGCCATCACATGCCTCTGACCTGCGGCTTTACTCTCG # Right flank : GCATCGCATCAGGTCACGTCCACGGATGTGGTGTATGAATCGATCTTCGCGTGATCCTGTTTCTGCAGGTTAAGCGGTGAGTGTCTGCGGGAGCGGGTTGTGGGCCGGTGTGTCGCCGGTGATGAGCCGGACGCGGGCTTTGGCGAGGATGTCCAGGCCCATGTAGCGGCGGGCTTCGGTCCATTCGTCGGTCTGTTCGGCCAGTACCGCGCCGACCAGCCGGATGATCGCGGCGCGGTCGGGGAAGATGCCGACCACGTCGGTGCGGCGGCGGATCTCCTTGTTCAGCCGTTCTTGGGGGTTGTTGGACCAGATTTGGCGCCAGGTCTCGCGGGGGAAGGTGGCGAAGGCGAGCAGGTCTTCGCGGGCGGCGTCGAGATGTTCGCACGCGGCCGGGTATTTGGCTTCCAGGGCGTCGATGACCCAGGCATGCTGGGTGCGGACGGCGTCGGTGGTGGGCTGGTCGAAGATGGTGCGCACCAGCGTGGCCACCCACGGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 316879-316067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 316878 29 100.0 38 ............................. ATGGGGTGAACCGGCCGCCGCCCCGCACTCACGGCCAA 316811 29 100.0 35 ............................. GTGACGTTGACCGTCCGCAAGACCCTCAAGATCAA 316747 29 100.0 36 ............................. CCGAAGACAAGCGGCCCGTCGACGGCGAAGGCCAGC 316682 29 100.0 41 ............................. CCGTTGTGCCGGTGCGCGACCAACACCTGTCCGGCCACCAG 316612 29 100.0 34 ............................. CGTGATAGGTCGCGTTGGTAGAAGTGATCACAGA 316549 29 100.0 35 ............................. GATCGTGTGCGACCGGAACTCCGGCAGTCCCAGGA 316485 29 100.0 36 ............................. TGCCATTTCCACGATTCCTGTCCCGGAATCACCCCA 316420 29 100.0 35 ............................. GCCTTGTTCGGCGTGGTCACGATCAGCGCGTATGT 316356 29 100.0 36 ............................. ACGGATTGACCGTTCACCAGCCGGGGCAGCCCGGGA 316291 29 100.0 35 ............................. GTGATCGACGCGGTGCTGCCGCCGACCATGATCGC 316227 29 75.9 37 .C....G.....TT..C........T.G. TCGTCCATCTGTACCAAGCAGAAGGGATAGCACAGAT 316161 29 72.4 37 .CC......TC..G....A...C.....G GCCTGCGGGACCGCAGCGGCAGCAGACTCGTCGATGG 316095 29 69.0 0 ..C.T.T.....G...........AACCG | ========== ====== ====== ====== ============================= ========================================= ================== 13 29 93.6 36 GTTGCTCATCACCCTGGAGGGATCGCAAC # Left flank : CGCACTCGGCTCACGGCCTCGAAAGAGAAGCCGCGCAAGAGACGCTGCGTCAACTCACCACGCCTGGCCGTACGTGCCGTCGCGCCTACGAGGCTGTTATCGCCGGCATCTGCGCAGCCGGACACGGGGACTGCGCAGACCCTGTCGGTCTCGCTATGGCATCTATGGACCTCGCGCGCCCTTCCGCGCGACGGCTAGTCCGAACGCTGGTCTCTCTGGTCGCCGCCGCAGGTCCGGACTGGTCTGAGGCGCGATGTTCGATCGATTCGATCGTTGCCACGCGCGTTCACCGCGAACACGTCTTAATCCTCACCGGGCTTGGACCGGACGAGGCTGCCCTCGCCCAGGTGGCTGTCCGGAGCTAGAGTGCCGTTCATACTGCGGAGGATCCAGTGACGACACCCCTTCTGACCTGGCCTCCTGCACTACCGGCGGACTGCTGCAAAATACATGCTCGGAGCCAGCTGAATCATTCCTTTGACCTGCAGCTTTACCTTGGC # Right flank : ACGAAGCGTAGACCTTGGCTGCCTCCAGCCATATCGGTATCACTTTGGCGGTAACTCAGAAATCGTCAGGGTCTGCTGCTACTACTAGGTCCACGTTCGACACGGACAATGAGGAGAGGTTTAGTGCGGTTTCGTGTTGATGTCACCCCAGATGTACCGGTTATGCCCTGGGGAGATGTTCACGGTCCGGCCAGGGCAGTGGTTTATGGCCTGATTGATGGTCAGGACGCAGGGGTGGCTGAAGAGCTTCACGATGTCGGCTGGCAGGGCAGTTCTCTTCGGCCGGTGGGGGTTTCTCCACCGCTGTTTCCAGGGGCACCACCGCGTCCACGCATGTATTCGACCTCGCCGAATGGCGTGATCTCGATGGGCTCTCCGGTGCCCCGGATCGCGGCGTGCCTGCTGGCAGCGCTGGCGGGACGCGGTGAGATCCGGTGGGGATCGGTGGTTCTGTCGGTCAAAGGTATCCAATTGGATAGCGTCGTGAGTCATTCAGACGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 330617-330123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 330616 29 96.6 40 ...............A............. GCGCGGACCGAAGGTGAACTTCTTCGGCAGGCCACGGAGG 330547 29 96.6 38 ...............A............. CCTTTGCCGAGTCGGCCATGCATTTACGCGTCGAAACG 330480 29 100.0 36 ............................. AGGGGCAGTCCATCAACAAGGGCTTTTCCTCCGAGG 330415 29 100.0 37 ............................. TTCTCCCGCGTGGTGCGGGTCGGCATCGGCTCGTCGG 330349 29 100.0 35 ............................. AAGGCCGACACGTAGTTGAACAACCCGAAGTGGAT 330285 29 100.0 39 ............................. GTGACGCCCATTCAGGTTTATGGGCGGACCATCGCGCAC 330217 29 100.0 37 ............................. TACGGCACGAGCGCGGGGACGTGGCCGGGCTGCTCGT 330151 29 93.1 0 ..T........................G. | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 98.3 38 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : ACTCGTCCAGGCCGGTGAACAAAGCAGCGGAGCCGCTGTAGCAGAGGTCTGTCACTCCAAGACATTCTCGTCACAGGAATTCAACTTGTATGGAATTACTATCGCACTCAAGCTAGTGGGTGGAACCGAATGCCGCCGGTGATCGACGTCGGTGAGCCGTGTACGAGGGTTCAAGGCGCTGCGCGAATGGAGTACGGCCTGAATCTTCCCGTCTGACCCGGGTCATTGCTGAGCAGTTCGCGCGGAGTGCTCGATGGTCCGCTGGATTAAGCAGCGGGGGCTGAAGGGAAAGTCGGTGGCTTGGGAGGTTCTTCCGGTCGGCCTCATGATGGTGGGTAGCTGCTATCACGGAGAGGAAGTGAAGGACATGGCTTATTCATCTGCGGTCCGAGGGATGGTTGAAGCTCTGACCTGGGCTTCTGCACTACCGTCGGACTGCTGCAGAATAGCGCGATCTGTATACCATCTCACAGCTCTTGACCTGCGGCTTTACCTTGGGG # Right flank : ACGTAGACCCGGCCGACGACGGCCTTGGGGATGCTGGGCCGCTCGTACCCTGGCCGACAGATAAGGCGAGCCTTCAAGATTTGTGGCGTGTTCCTTGACCCTTCGGAACTTCCTGGTAGAGAACGAGATCTAGGTCATCTGCGTTTACCGGTGGTAGGGAGCGTCCGTGGCCGGGCAACACCTCAGTCCTCTTCGTCTTCTGGTTCTTCCCGGTGTTTTCGTTGGCGGTGAACCATTCATAGGATCGACCACGCGGGTCGGGCGGCATCGGCATCGACAAGTTGGCTATCATTCCCAATGGCCGGACCCGAGGATAATGGACGGGAAGTTCGGGCCGTCCGGTGGTTGTGGCCAGGAACACATCTCGTATCTCCTTGTGAGGCGTGTCCTGCGTCGATTTCTCGAATTCTTCGAGCGCCATTTTCATAATCTCTGATGGGTCCGGCGTAGGCGGCTCGGCGGTAAGGCTCCGGTAGTAGGTGGCCCAGTCCTTGTTACCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : GCCGCTCATCACCCTAGAGGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 6 333844-332836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000007.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 333843 29 100.0 35 ............................. GTACGGTCAGTAAACAAACAACCGACCCGACTCGC 333779 29 100.0 39 ............................. ACGACGTCAAGCGGGAGTTGAACGACGTCATCCTGACCG 333711 29 100.0 36 ............................. GGGATCACCAGTATTTGACATGTGCTGAACGTACCA 333646 29 100.0 34 ............................. ATGGAAGGCCAGCAGGTCGGTTCCATAGTCGAGG 333583 29 96.6 34 ..T.......................... ACGACCTGCCCGACGACGTCGTCACCTACGTCCG 333520 29 100.0 36 ............................. ACGATGAGGCGTGTGCCGAACTAGCAGGATTGGTCA 333455 29 100.0 36 ............................. TCGGGTTCGACCCGGAGAAGCGCCGCCCGGGCGGGG 333390 29 100.0 37 ............................. AGGGCCGCGGCGCCGGCAAGGACTCCGGCGGCCGCGT 333324 29 100.0 34 ............................. GTGCGCAGCATCATGCCCAGCGCCCGCGCCGAAG 333261 29 100.0 38 ............................. ACGGCGACGGCGTGCTCGACGGCGTGCACCGTGTGGGA 333194 29 100.0 38 ............................. GTGCCGGTGAAGCTGACCACGTGCAACCACGCCTGCAG 333127 29 100.0 34 ............................. CCGCCTGGGTCGGCGGCCCCGCCGGTCAACGCCA 333064 29 96.6 37 ..T.......................... TTGGTGTCTGTGGTGATCGAGCAGGCGGTGGAGGCGA 332998 29 100.0 38 ............................. GGGACGACCCCATCCACCTGGGCGAGATCATCCCCGAA 332931 29 100.0 37 ............................. GGTCTAGAGGCATGCTGGGTCTCGAGGCCCCCTAGCG 332865 29 100.0 0 ............................. | A [332854] ========== ====== ====== ====== ============================= ======================================= ================== 16 29 99.6 36 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : GTCCAAGGGGCGCGCTGTCGTGCAAGGCACAGTGACAGAGGATAGGCAACTTGGTGACGACGATGGCTGCGACTCCTCCGAGGAAGCGGTGTTCGGTAGGGTGAGGCGGTCGATCTTCGTCGGGTTGCCTGGCAGTGGGCCTTGGCGAATCGCCTTCCGGACGTGGCACTCCCGTCTGGCCGGGTCGTCGCTGAGCGGTTCGCGCGGAGTGCTTGATGGGGCCGCTGGATTAAGCGGCGGGGGCTGGAGGGGAAGTTGACGGAGCAGGATGCTTCCATTGCTGTCTGAGCGCAGTGAATTCTGAGAAGGTTCTTACGGCCGTCCGCATGATGGTGAGTAGCTGCTGTCTCGGGGAGGAAATGAAGGGCATTGCTAACTCATCTGCGGTTCGAGGGACGGTTGAAGCTCTGACCTGGGCTTCTGCACTACCGCCAGACTGCTGCAGAATAGCGCGATCTACATGCCATCTCACAGCTCTTGACCTGCGGCTTTACCTTGGG # Right flank : ACAGGGCCACGTCCCGTTGCGTGGCGTAAGTGGGTGTCCGCGTGAGGCGCTGCCAGTGCGACTATGCCGTCACTAGTTCCGTCTGTACTTCCTTCTGCTGATCGGTGCCAGGCATGGTGAGCGGCGCCATAGAAGGCCGACTGGCAGATCCGCCGCCATGCTGGATCGTGACCCATTGAAGGCCAACCCGCGCAGCCTGGGATACGTCTTATCCGCGTCCCCCTAGCCGCATGGAGCGCTCCCGTGTCCCAGCCGCCTTACACAACCCGTACCAGATGCGCCGCGCCTCGGGCGCCCTGCCTGTGGTGTTGATCGTTGTCCTGCCAGTGGCGGCGATCGTCGCGATTGCCGTCTTCGCCGTAGTGATCCTCACCCAGCCGCAGGCTGGTGACGGCCAGTCGACCTCTGGCACTGGCCAGGTTCAGGAGCAACCTGCGGGCGATGACCAGCCGCCGGCCGACCGGTCGGAAGCTGCGGTGCGCGCGGCGGCGACGGACTAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 316334-315769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000008.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 316333 28 100.0 38 ............................ GTCCAGGGCTTGGGGAGGCGGAGGGTGTGGTTGCGGGC 316267 28 100.0 35 ............................ ATGGTGGCGGGTGACTTCTCCTCTTCGGCCAGGGC 316204 28 100.0 37 ............................ TGGATGGCGTAGTCGTACGGGCTGTAGGTTGGCGCGC 316139 28 100.0 41 ............................ GTGTACTCCTGGGCGTTGTACTCGGCGCGGCAGGCCCGGGC 316070 28 100.0 46 ............................ CTCCTTCAGCTGAAGCTCACCCCGGGCGCTTCCGCCCTCATCGCGC 315996 28 96.4 38 ....................A....... ATCACGGCTGGCGCTATCGCGGCCAACGCGATCACCGT 315930 28 96.4 37 ......................G..... GCTCATCCTGCGGCGGTAGCCAGCCCTTGCGAGCGGT 315865 28 96.4 41 ...........T................ CCGACGCCTTGGCCGTAGCGTAGCCGTAGCCGAGCTGTTGT 315796 28 89.3 0 .......A...........A..T..... | ========== ====== ====== ====== ============================ ============================================== ================== 9 28 97.6 39 CCTCATCGCCCCTACGAGGGGTCTCAAC # Left flank : AGTCGGTGGCCGGCCCTGGTCAAGCCGTTGCATACGCGCAATCGCTGCGCAACGCGGTCCGCGCACAGCTCGAAAGCACACCAGCCGAGCGGGTACACCTCTTCCTCGCCGGCCCTGGAGGCCTCGCCCTGCTGCTTGGCCACCGGTGGAACCGCGTCGCGCCCACCACCGTGTACGAGGATCTTGGCTCAGGCCACGGCTATACCGCGGCGTTCTCCATCGACGCATAGACGGTCAAACCACAGAAGGCCAAGGGCGCTGAAGCCATAGACAGCGAGGGCAACGGTGTTGTGTTGATCAAGAAGCTGCCCCTCTTCTTGCCTCGCCCAACTCAGATGCACGTTGGTCTTTGCTCCACCCTCTAGAGAGCGCGAAGCACAAAATGATCAAGGATATTGCAGCAAACCTCCCGGCTTTTCTGCACGACCGGAGGTTCACTGCAAACCCTCCCCGCTTGACGTACCTGAAAGGGCTTCTGAGCTGTGACTTTACGTTAGGGC # Right flank : AAGTTCCCGAGCTCCTCCGCGTACCCCTGCACGATCTTGTCCTCATCGAGGGCTCGGGCCGCTGATATTGGGGGCGGTTCTGCGTCTGCCACCCCTCGGTGTCGGCCAACCCCCTGGAAAGCCCAGGTGGGGATCTGCCCAGCGGCTTGGCGATCGCTCAGGCTTTTAAGGTCTGCTGCAACCATCCTTGATCATCGTATGGCGTGGTCTCTAGAGGATGTCGGTCGGAGCGGGTTAGCCAGATTACCGGCCGGTTCGTCGGTCAGGTGCAAGCCGAGCTGGCCGTACACCTCGCCCTTGTCCTTCGGATTCGTGCTCCTGGACGCACATACGTTGCAGCCGACTGACTACGACCGTGGTCGGATGGCAGCGGCTTCGGTCCCGTCTACGGTGGTAGGCGTCATGCCTTCTCCGGACCGCTCCGCCCTCGGCCGGCTGCTCCGGGACGCCCACCCCGTCGGCCGGCTGCTCCGTGATGCCCGGCTCGCCGTCGGGCTGGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCATCGCCCCTACGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 319009-318124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000008.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 319008 30 100.0 38 .............................. CGAGGCACCTGCTTCGTCACGACCAGCCCTTCCCGCTC 318940 30 100.0 36 .............................. TTGATGTGGATAGGGAGAACGGCGGGCACGGCGAGG 318874 30 100.0 37 .............................. CACTCGCCTTCCGCGCCCGCCACGAGAAGGACATCCG 318807 30 100.0 35 .............................. GCATGATCGAGGCCGAGTCTGCGGAGCTGATGGAG 318742 30 100.0 34 .............................. ACCATCTTCATGAAGGCGATTCGCTGGAATCTGA 318678 30 100.0 36 .............................. CCGGACAGGCCGAACGACTGGGCGCTGTAGCCGGTC 318612 30 100.0 33 .............................. GACTCCGTTTCGACGCTGCCCCACATGGACATC 318549 30 100.0 37 .............................. GACCTGACCGGCTCGCGCGGCGCGGCGGCCGTACCGG 318482 30 96.7 34 ...........................T.. CTCATGATCAGTCCTTTCGCTACTTGACGAGGAG 318418 30 100.0 35 .............................. GTGGAGACGGAGCGGAAGCTCGCGACCATCAGAGG 318353 30 96.7 35 ...............G.............. GTGCACGTGGACGACCATGGCGGTTGGTCGTACAC 318288 30 100.0 37 .............................. GCGTCCGGATTTCGGCGCTGGGCAAGTTTTGTGCCAT 318221 30 93.3 38 ........................TC.... ATCCGGATGTCGATGCCGCCCGTGATGTCCAGCGTCAC 318153 30 83.3 0 ......G.A..T....T............A | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.9 36 GTCCTCATCGCCCCTACGAGGGGTCTCAAC # Left flank : CGTCGCCTACGACGAACTTCTTTACCTCGAGGCTCTGCAGCTCACCCGCCGCTGCCTGGAAGGCGTCCCGTACAAGCCGTTCAAGATTTGGTGGTGACGCGACATGTACGTCGTGGTCGTCTACGACACCCTCGCCATACGGAACGCCGCGATCTTGAGGCTGTGCCGACAGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAAGGCAGCCTCAGCCCGGCGCAGCTACGACGTTTCCATCATCAGGTGAAGGAGGTGATCGACGCTGGGTACGACAGCGTGCTGGTCTTCACCTTTCCCCCTGGGACGACACCTGAGCGGCAGGAGTGGGGGGTCGGCCAGCCCGCTCCGAGCGACATCCTCTAGAGACCACGACCATATGATGATCAAGGATTTTTGCAGCAGACCTCCCGGCTCGCCTGCACGACCGGAGGTTCACTGCAAAACATGCCCGATAAGCCAAGCTAAAGAGGCTCCTGAGCTGTGGCTTTACCTTGGG # Right flank : TGGACCTGCCGCTCAGCGTCACCCAGTTCGCCTCAGGAGGCCCAATGACCGTACTGCGACCCGCCACCGGCCCCAACTCTCGCAGCGGCGTTCGCCGCTCCGGCGACCGTTACCAGGACCTGATCGGGTGGAGCGCCGCCATGCGCGTCATGCACCCCACGAACGACATTCAGCGACTGGAAATCGAGGTCAATGGCGTCGGAAACATAGACGACGTGGTCCTTCGTTCCGCGAGCGGACGGCACCACTATGCCCAGGTCAAATGGACCACCAATCCAACCAACATGATCGACCACTCCTACCTCACCAAACAAGACACCAAGAAGAGCAAGTCGCTGCTGCAGAAGCTCTTCCACAGTTGGAAGAAACTCACCACAGCGGGAGACCCGCCGGTCATGGAGTTGGTCACCAACCGCGTCCTCGACCCAGGCGATCCCCTGCTCAGCCTGTTGGACGGTCGAACTGACCTGCTCAATCCCGCTGCCCGCCTGCTGACACCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 327338-328030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000008.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 327338 30 100.0 34 .............................. GCCTGCTTCTCGGCGCTCCACGCCTCCGACGGCT 327402 30 100.0 37 .............................. CAGGTGAAACGCGAATACCACCGGCGGCGGCGATGAC 327469 30 100.0 36 .............................. ATGACGAGGACGGACGAGTCGGCCAGCTGCTGGCCG 327535 30 100.0 35 .............................. GTGCTGGTGCGGACTTCGGGGCCGACGTAGTGGGT 327600 30 100.0 36 .............................. GTAGAAGTGGGCAAGCGCCGTCAGGTGAAGCCATTA 327666 30 100.0 36 .............................. CGGAAGTTCAGCGTGACGGATGGGACCGGTAGGCCA 327732 30 83.3 36 ......G.....TT.AT............. GAGCGACGCTCGTAGGTCATCGACGGGTGCAGCTAA 327798 30 90.0 39 .............T.AA............. AGCCATTCGGGTACCAGGTTCCTGATGTCGGCGGGGGCG 327867 30 86.7 38 ......G......T.AA............. ATCACAGCGACGTTGTTCGGTCCCTCCGACCAGTCGAG 327935 30 93.3 34 ...............AA............. ATCTCCGGGCCGACCACCAGGTAGCGGTCTGCGG C,A [327945,327951] 328001 30 90.0 0 .G...T..........A............. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 94.8 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : CCGCGTACTTCCCCTTCCGGCGCTTCGCCAGCGGAAACATTGGAGCCCCATGCCCCACAGGCACCATGCCGTACGGCTCCATCCCCCCGGCGTGGAAGTACCGACCGACCACGGGGGCTTCGCGGTTGAGCACGTCATAGATCAGCCCCCTGCCCGGTGCCAGCACCATGCCCCACGGGATCTCTGCGGCCGTCGTACTGACCTCCACGCGCACCCGCATCGTTGTCTCCTCTGCTCTTCGTCGCCTTCCACCTACTACAGATGGACGAAGACTCGGCTGACCCCGATCGGAGGTCATTCCTGCAGGCCAGGAAGGTGGTACGAGCGGTCACGAGATCAGTTGGTATGGTTGCTCGTGGTCCTCAACGTGATCAGGCGCCGTCATGTGATCATGGTTTTGCAGCGAACCTCCAGAGTTTTCTGCACAACCGGAGGTTCACTGCAAAACAACTCCTGAAGCCGCATCTCTTGTGCCGTTTGACCAGTGGCTTTACCTTGGG # Right flank : CTCCACCTGATCAAGGCGCTGCAGCATCAGTGCGGTGGCGCTCATAGCCTCTGCAAGGTCCAACCGGATCTACCTCCCAGGCATAGCGACGAGCGCGCCCATTTCAGCGGGCTCCGCGCGTCGTCCATCAGTAAGAGATGGAGGGCAAGCTTGGGAGGGAATGCGCATGGCGGTGCTCAGAGGGCCTGGGAACCTTTGGGGGAAGACATCCGGCTGGATAGTGGCGGCGCTTGCGGGTGTGGCGGCGGCCGTGGCTGCCGGAACGTTGCCCGATGTGATCAAAGGTTGGCTGGGTCAACAGCAGTGGTTGTTGACGATCTTGTGTCTGGGGGCGGCCGGGGTCTTCGCCGGCATCAACCTGTGGCAGCAGCGCAGCAAGGGTGTGGGCATTGTCATCACGTTGCCCAGGGCCCCCTGGCGGGATCCGTGGAACAGCCAGTGGACCAGGGCAGCGATCGATCATGCCAGACGGCACAGGGACTCCTGCTTCACCGTGGAGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 341284-342435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000008.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 341284 30 100.0 38 .............................. ACGTCGCCATCAGCCGCAAGACCACCTACCAGCCGCTC 341352 30 100.0 34 .............................. AAGGTCCCCGCCCGGCGGACGCCGCCGACCTGCG 341416 30 100.0 35 .............................. CCGGTGATGGTCAGCGGCGCGGTTCCTGCCGTGGC 341481 30 100.0 37 .............................. CGGGCTGTCTTGGGCTTGCCCATGCTGATCCTTTCGA 341548 30 100.0 33 .............................. CGCTTGGTGGTGAAGATCCGGAAGCTACCGGGG 341611 30 100.0 35 .............................. GAGGTGCCCGTGCCGGGCCCGCTCAGCTTGCCCGA 341676 30 100.0 37 .............................. ACGACCGTGATCGCGCCCTCGGCGTCCTCGCGTGCCC 341743 30 100.0 35 .............................. AGCTTGTCCGAGGCATTCACCGCCATGGCACCCGC 341808 30 100.0 38 .............................. CCGCAGACGGCGCCGCACGGATGCTTCTTGACCGCGCC 341876 30 100.0 38 .............................. CGCGCGTGACGGTGGGTAGCGCGCCTACGGCGCGAAGA 341944 30 100.0 36 .............................. ACGAGCCTGGGCATGGCGGCGCCGTAGGGGCAGGGC 342010 30 96.7 37 .......................C...... CAGGTAGAAGGGCTGACGCCAGGGTGCCGACCAGCTG 342077 30 100.0 36 .............................. TACAACGGCTCAGGACTGGAGGGACCCTCGTCCTTG C [342091] 342144 30 96.7 35 ....................T......... CCGTCCTTGACCAGCATCGGCCCGGCCATTATCTG 342209 30 100.0 36 .............................. ACATCCATCTCTTCCTAGCGGGACAGATCGGCAGTC 342275 30 96.7 35 A............................. AGGAAGTGCAGGACCGCGCCGAGTATGGCCACGGT 342340 30 100.0 37 .............................. GGGTGACTTTGCCCCTGTAGTGGTCGGTCACGTTGGG 342407 29 83.3 0 ..........-.....T....TAG...... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.5 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : TCGAACCCTCACCGCACTCATCGCCGACCAGGGAGCCCGACAGGCCAAAGACCACTACCGGGCCCTCCTCAGGGCCATTTCGGCGACCGTCCTCCCCAGCGGCCCGCAACTGCTCGCGTGGGTCACCCGGCAGTTCAGCATCGACATGAAAGCCGCCGAGACCTTCGTACGAACCCTGATCCGGCTCGCCTGCTCGGCCGGCCTGGACTGGGTGGCCGCAGAGTGCACATGATCTATCGAGGCATCGGGTATCCAACAGGCAGGTGATCGTGGAATGGCAACGCTAACGGCTGAGGTAGGGGAAGATCGTCCTCGGCATCCCGGGATAGAAAGCGTATGGGGGGCATATTTCACCGGCAGCTCGAACGTGGTCCCCTCGTGCCTGCTGAGCTGGTTTGTGCAGCGAACCTCCGGGGGTTACTGCGTTACCGGAGGTTCGCTGCAGAATGGCTCAGTAAGCGGGTCCTCTTGCGTAGTCTGGCCTGGGACTTTACTTTGGG # Right flank : CAAGCCGTGAAGATCACGGACAACGGGAATGACGCCGTACTGCTCCTACGGCCTCAAACTGAACATCGTCCTGCAGGTGTCCGGAGTCGGGCTCGACTTGGCAGGAAGAGCGAAAGTCACGGCCTTGCTTGGGCAGCCGGTGACGGAGGATCTGGTCAAGTAGGTGACGCAGCGGGCGCCTGAGAGCTGGTGGACCAGGAGAAGCCCCCGGCCGCTCTCCTGGAACCACCTCGTGAGCGGGTCAGCAGTGTTCAGGTCGCGAAGAATCTTTGCGACACGGGTGAAGCACGGGTCGCCGTCAACGATCTCGCACCAGGTGGGGATGCCGTTCACGGAGACGATCCGCAGTTCGTACGGCGGGCACGCGTGCGTTTCGGCGTTGGCGGCGAGTTCGCCTACTGCGAGCTCCGCGTCGTCGATGTCCTCGGTGGCAACGCCGGCGTCCTGGAGCACCTGGCGGAGGATGGCGCGGGCTTGGTGGGCGACGGAACCAGGCTGCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 345247-345936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWLT010000008.1 Nonomuraea glycinis strain NEAU-BB2C19 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 345247 30 100.0 37 .............................. ACGGCCACCGCGTCGAGATCCCGTGGGAGCTGGGCCC 345314 30 100.0 35 .............................. CAGCATCTCGGCGGCGATGCGGTCCCACCTCCCGT 345379 30 100.0 36 .............................. GTTGAGGAGGAAGGCGTGGGCTGCCTGCACGTCTGG 345445 30 100.0 37 .............................. AGCAGGTCGTAAGTAACGCGGCCTTGGAGTAGCGCCA 345512 30 100.0 33 .............................. TGGGTGGAACGTGGGCTTAGCGGCCGATCCAGG 345575 30 100.0 38 .............................. GCGCAAAGCGCCTGGAAATTATCAAGCTCTCAAGAGCC 345643 30 100.0 33 .............................. ATGACCGACAGTTAATGCCGCTGGTGCGCTGAG 345706 30 96.7 39 ................G............. AGTGAGAACCCCGTCTGGCTCGACGCATCCAGGCACCAG 345775 30 100.0 36 .............................. TGCGGAGTGGCGGAGACGACGACGTCGAAGTCCCCG 345841 30 86.7 36 ......C...............A...AG.. CAGCACGCGGGCCGGGTCATGGCGGGCGATGTGAGT 345907 30 93.3 0 ......................A..G.... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 97.9 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : CCACGACGAAGTCCCGGTCACCTGTGGCGGATACCGGCCCTTTTCCGGACGACTGGGCATCGTCGAGATCAAGAAGATGTACACCGTTCCGCACCTGCGCGGTCTGGGGCTGGGCGAGCGCATCATCACCGCGCTCGAACGCCAGGCCATGTTGGACGGCGTGCAACGCTCGATCCTGGAGACTGGAGTACGTAACACCGCGGCTCTGGCGCTGTACGCCCGGATGGGCTACCAGCCGACAGAGCGGTACATGGACAACCGTGACCCTGCGATCAACCGTGCCTTCATCAAGGACCTCACTCGATGTCCTGCCACTCCTTGAAGCCCTGGACCGGATCGGGGGAGGAAGTACGGAGGTGCTCGAACATGATCTCCACGTACCTACTGAGCTAGGTTCGTGCAGCGAACCTCCGGGGGTTTCTGCGCGACCGGAGGTTCGCTGCAGAACGGGTCAGCAAGCGGGCCCTATTGCGCATTCTGGCCTGGGACTTTACTTTGGG # Right flank : CTGTGGGAGAACATCGTCAAGATGTACGTCCGCATGCTGGGTGCTCATTACTTTGAAGGATCGCAACGTGATCTCGCTTGCGGCCGCTGGTGATCGGCGATCATGCATTGGTTCCTGCAGTGGGCGTACTAAGCATGCGCGACGCGTTTCGAGGGGGCGTTCAGTTGTTGCAGGACGGCTTGGGTTTCGGGTGACGGGATGGCGCCGAGGGTGTTGAGGCGGGTTTTGAGGTGGCGGGCGCGTTGGCGGGCTTCGTTGGTGCGGCCGAGGGTGGTCGGAGGCGGATGGTGGATCGGGTGGCGGTTTCCATGTCGGGGTCGAGGGCGCAGGCCTGATCGTAGGTTTCCAGGGCGCGTTCGTGGAGGGCGTCGAGTTGGAGCAGGGCTTTTACGCTGGCGATGGTGAGGGGCCAGCGGTGGTCTTGGTCGAGCCAGTCGTATTTGAGGCCTCGGGCGAGTGGGCCGCGGCATAGGGTTGTGGCGGTTTCCAGGGCGGTGAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //