Array 1 1235255-1234131 **** Predicted by CRISPRDetect 2.4 *** >NC_015850.1 Acidithiobacillus caldus SM-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1235254 28 100.0 34 ............................ GAAGCGAGTTGGACAGCGACTACCACGCAGGCCA 1235192 28 100.0 33 ............................ GCCGACAGGCTGGCCGCGCTAACGGCTGGTTGC 1235131 28 100.0 33 ............................ CCACAAGTCGGCCACCGGCAACACGAATCTGGG 1235070 28 100.0 33 ............................ GTCATACCAAGCCTCTGTAGCATGGTGGATGCC 1235009 28 100.0 33 ............................ GTCCCAAGTCCGCGGCGCTGGAATATCTGCCGC 1234948 28 100.0 33 ............................ GCGATATCAGGGTGTTTCTGGGGTCTCTGTTCT 1234887 28 100.0 33 ............................ CGAAGATGAGGCGATAAGTCCAGACGACGCACT 1234826 28 100.0 33 ............................ GCGACTGTGGGAAATTCTTACCGAGCACCAGCC 1234765 28 100.0 33 ............................ GTCATGAAAGCGTCTACGACCTTGAATAATACC 1234704 28 100.0 35 ............................ TCTTACAGTATGGCGCGGAACGCAGCCGGTGGCGT 1234641 28 89.3 32 ..........T..............C.T GGGGTCCAGCCCGCGGCCTTGCAGCTTGAGCC 1234581 28 89.3 27 .............AT........G.... CGTTCCGACGTAAGCCGGTCAATCATC A [1234578] 1234525 28 100.0 35 ............................ CGCCTTGAGCTCCCTGGATTCCGCCATGTGGAGGA 1234462 28 96.4 33 .............A.............. GTACGCGGCTCATGCACACCATTCCAGCGATGG 1234401 28 89.3 31 .........................CTT TTTGCAATCCGCATTTCGCATTTGCTGCGCT 1234342 28 85.7 33 T..........A..T........G.... TTGCGGGGTTGTCTCTGTTGGAGATTTTGGGAA A [1234330] 1234280 28 89.3 33 ...A..........T............T ATGCAGTGGCTCGGTGGTTCGCGGGCCAATAGG 1234219 28 92.9 32 .............A.........G.... CGATTTGGTAGCAGACCATCTGGTGGATAATC 1234159 28 89.3 0 .G.........A..T............. | T [1234156] ========== ====== ====== ====== ============================ =================================== ================== 19 28 95.9 33 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTCAAGCACATCAGCGAGCGCCCCTGGGAGGAGATCGTGGCTGGTGTGGAGTGCGAATGGGGCTACCAGATCCACAGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAAGGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAGCATCTGTCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGGGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGCTAGA # Right flank : GGAACCCGCGACGGGCCTTTCAGGCCGTTTTCCGCCGCAGGGTTCCCTCGTCCTTTCCTCGACAGACCGCCCGGCCCGGTTTGGCCAATCGCCCACGAATCCAGGTGGGGAGGTCCATGTCCCGCGTGAGCATTATGCCTTTGGGGCTGTGGCCCAGGTGAACGACCGGCGATTCCGAAAGGGAAAAGTGGTCGCACTCCACCCAACGGGCGAAGGCCTGTTGGAAAAACCGGGAGAGGAACCGGATTTTGTCCCGTTGGCCGATCCGGCGGAAAAAGGCTGCATGCACCTGCAGGTGTTCCTGGTCGTGCTCGACCAGAAGTATCCCGTACACCTGCAGGGGCTGTCCTTCGGCGTGGGAAATGCCGGCCCAGGCGGAGCGTGTTGCGGACGTTTGCCCGAGCACGCGCACACCGTTTTCTTCGAGTATCTGTACTCCCCGACGATACGGCAGATGTACCCATTCGTGATGCGAACGCTTTTCCATGGTGGACCTCCTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 1237000-1236314 **** Predicted by CRISPRDetect 2.4 *** >NC_015850.1 Acidithiobacillus caldus SM-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1236999 28 96.4 33 ..............T............. CAGAAAATACGTGTCCGCGCAGCGTTTCTGGCG 1236938 28 96.4 33 ..............T............. TCTGTCCACTTCGTGGTTTACCACTTCGTGGGC 1236877 28 92.9 28 .............AG............. TATCTGGTTGCCAAGGCTAAAGATACCG 1236821 28 92.9 33 ............C.T............. CATCAAAGAGGGTTCCTCGCGAGATTTTCCTTG 1236760 28 100.0 33 ............................ CGGCGAGGAGCACATTCTCGAGGCCCATAACCC 1236699 28 92.9 26 ............C.T............. GTGATAGATAGCCATGCCTGCTCCTG Deletion [1236646] 1236645 28 100.0 33 ............................ GCTGGCGCAAGGACTGGCAGGCAAGCGGGGCTA 1236584 28 89.3 33 ............C.TA............ TTGAGATCCCCGAGGGAGCGACAGACTGGAACG 1236523 28 85.7 33 A....T.....A..T............. TCCACCGGCGGCCAGGTCTCGTAAGGATCCGTC 1236462 28 100.0 33 ............................ TTCCGAGAAACCGGCAACCACCTGGCTGTCGGG 1236401 28 96.4 32 .......................G.... CCAGGTCTCGATTTCCTTGTCGTTTTTCGCTG 1236341 28 75.0 0 T............AG........TTCG. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 93.2 32 GTCGTCCCCGCGTGCGCGGGGGAAAACC # Left flank : ATTCGGTGGACGACCGGGATTTCCTGTTCGCGCCGTACGGGGAATCCATCGTGTTTCGTTCCCGTTCGGAACCCTTGCCGGACACACACGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGCAGGTCGAGCCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCGGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : ACCAAAATCGGTGTTTTTGTTCGTTTGATAAAAGGAGACACGATATGTCGATGTTGGAAACTCTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGATCGGCCTTTTCGTCGGACGACAAGGGGGCGCCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGTTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCCTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAACGGAAAAAGGACAAGGGAAACCCCCAAGGCCGGAGTAACGGCAAAACGAAAGCCAAGGACGTCCTGCGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGCCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCCTTCCCGCTGCCCAACGCGCAGGGGCAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //